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comparison hairpinTool.xml @ 14:44130e484a97

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- Fixed xml file so tool actually functions
author shian_su <registertonysu@gmail.com>
date Wed, 19 Nov 2014 11:05:03 +1100
parents 7aaa9bc23e3c
children 5a917ea5bed2
comparison
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13:7aaa9bc23e3c 14:44130e484a97
1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.2.0"> 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.2.1">
2 <description> 2 <description>
3 Analyse differential representation for shRNAseq and sgRNA based procedures 3 Analyse differential representation for shRNAseq and sgRNA based procedures
4 using edgeR package from Bioconductor. 4 using edgeR package from Bioconductor.
5 </description> 5 </description>
6 6
13 <stdio> 13 <stdio>
14 <exit_code range="1:" level="fatal" description="Tool exception" /> 14 <exit_code range="1:" level="fatal" description="Tool exception" />
15 </stdio> 15 </stdio>
16 16
17 <command interpreter="Rscript"> 17 <command interpreter="Rscript">
18 ampliconTool.R $inputOpt.inputType 18 hairpinTool.R $inputOpt.inputType
19 #if $inputOpt.inputType=="fastq": 19 #if $inputOpt.inputType=="fastq":
20 20
21 #for $i, $fas in enumerate($inputOpt.fastq): 21 #for $i, $fas in enumerate($inputOpt.fastq):
22 fastq::$fas.file 22 fastq::$fas.file
23 #end for 23 #end for