Mercurial > repos > shians > shrnaseq
comparison hairpinTool.xml @ 8:548802b3492f
Version 1.0.9
- Added R session info to output
- Added email for bug reports
- Changed edgeR requirement to be stopping condition
- Changed names of gene-wise comparison tables to "gene_level" from "roast"
- Fixed selection of multiple genes for barcode plotting
| author | shian_su <registertonysu@gmail.com> |
|---|---|
| date | Fri, 02 May 2014 17:22:24 +1000 |
| parents | 91e411fcdecc |
| children | f1076bfb0ed1 |
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| 7:91e411fcdecc | 8:548802b3492f |
|---|---|
| 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.8"> | 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.9"> |
| 2 <description> | 2 <description> |
| 3 Analyse hairpin differential representation using edgeR | 3 Analyse hairpin differential representation using edgeR |
| 4 </description> | 4 </description> |
| 5 | 5 |
| 6 <requirements> | 6 <requirements> |
| 403 Biostatistics, 9, 321-332 | 403 Biostatistics, 9, 321-332 |
| 404 | 404 |
| 405 * McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis | 405 * McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis |
| 406 of multifactor RNA-Seq experiments with respect to biological variation. | 406 of multifactor RNA-Seq experiments with respect to biological variation. |
| 407 Nucleic Acids Research 40, 4288-4297 | 407 Nucleic Acids Research 40, 4288-4297 |
| 408 | |
| 409 Report problems to: su.s@wehi.edu.au | |
| 408 | 410 |
| 409 .. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html | 411 .. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html |
| 410 .. _limma: http://www.bioconductor.org/packages/release/bioc/html/limma.html | 412 .. _limma: http://www.bioconductor.org/packages/release/bioc/html/limma.html |
| 411 </help> | 413 </help> |
| 412 </tool> | 414 </tool> |