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1 ==================================================
2 Galaxy wrapper for InterProScan 5 prediction tools
3 ==================================================
4
5 InterProScan is a tool that combines different protein signature recognition methods native to the InterPro
6 member databases into one resource with look up of corresponding InterPro and GO annotation.
7
8 This wrapper is copyright 2013 by:
9 * Bjoern Gruening
10 * Konrad Paszkiewicz
11
12
13 This prepository contains a wrapper for the InterProScan_ command line tool.
14
15 .. _InterProScan: http://www.ebi.ac.uk/interpro/interproscan.html
16
17
18 Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web Server issue): W116-W120
19
20
21 ============
22 Installation
23 ============
24
25 Please download install InterProScan according to:
26
27 https://code.google.com/p/interproscan/wiki/HowToDownload
28
29
30 ========
31 Citation
32 ========
33
34 If you use this Galaxy tool in work leading to a scientific
35 publication, in addition to citing the invididual underlying tools, please cite:
36
37 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
38 Galaxy tools and workflows for sequence analysis with applications
39 in molecular plant pathology. PeerJ 1:e167
40 http://dx.doi.org/10.7717/peerj.167
41
42 Full reference information is included in the help text.
43
44
45 =============
46 Input formats
47 =============
48
49 The standard interproscan input is either genomic or protein sequences.
50 In the case of genomic sequences Interproscan will run an ORF prediction tool.
51
52
53 =======
54 History
55 =======
56
57 interproscan:
58
59 - v5.0: Initial public release of version 5.0
60
61
62 =============
63 Licence (MIT)
64 =============
65
66 Permission is hereby granted, free of charge, to any person obtaining a copy
67 of this software and associated documentation files (the "Software"), to deal
68 in the Software without restriction, including without limitation the rights
69 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
70 copies of the Software, and to permit persons to whom the Software is
71 furnished to do so, subject to the following conditions:
72
73 The above copyright notice and this permission notice shall be included in
74 all copies or substantial portions of the Software.
75
76 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
77 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
78 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
79 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
80 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
81 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
82 THE SOFTWARE.
83