Mercurial > repos > si-datascience > interps_test
diff interproscan5/data-n/__base__.xml @ 0:0da2847fc108 draft default tip
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| author | si-datascience |
|---|---|
| date | Thu, 24 May 2018 14:57:30 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interproscan5/data-n/__base__.xml Thu May 24 14:57:30 2018 -0400 @@ -0,0 +1,2204 @@ +<?xml version="1.0" encoding="UTF-8" standalone="yes"?> +<protein-matches xmlns="http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5"> + <protein> + <sequence md5="0d2c0f1acdd08ab0157f2308531a58e4">MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG</sequence> + <xref desc="FRDA_ECOLI Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3" + db="sp" id="P00363" name="Fumarate reductase flavoprotein subunit"/> + <matches> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="423" end="443"/> + </locations> + </coils-match> + <coils-match> + <signature ac="Coil" name="Coil"> + <signature-library-release library="COILS" version="2.2.1"/> + </signature> + <locations> + <coils-location start="473" end="493"/> + </locations> + </coils-match> + <fingerprints-match evalue="2.5E-5" graphscan="I....I..."> + <signature ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"> + <models> + <model ac="PR00411" desc="Pyridine nucleotide disulphide reductase class-I signature" + name="PNDRDTASEI"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="6" pvalue="0.0222" score="30.15" start="375" end="382"/> + <fingerprints-location motifNumber="1" pvalue="4.15E-10" score="41.52" start="7" end="29"/> + </locations> + </fingerprints-match> + <fingerprints-match evalue="3.0E-10" graphscan="I...I"> + <signature ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"> + <models> + <model ac="PR00368" desc="FAD-dependent pyridine nucleotide reductase signature" name="FADPNR"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="1" pvalue="4.72E-9" score="47.18" start="8" end="27"/> + <fingerprints-location motifNumber="5" pvalue="3.2E-8" score="30.52" start="360" end="382"/> + </locations> + </fingerprints-match> + <hmmer3-match evalue="4.2E-250" score="829.0"> + <signature ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"> + <entry ac="IPR014006" desc="Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" + name="Succ_Dhase_FrdA_Gneg" type="FAMILY"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016627" + name="oxidoreductase activity, acting on the CH-CH group of donors"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0022900" name="electron transport chain"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0050660" + name="flavin adenine dinucleotide binding"/> + <pathway-xref db="KEGG" id="00020+1.3.5.1" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="KEGG" id="00650+1.3.5.1" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00190+1.3.5.1" name="Oxidative phosphorylation"/> + <pathway-xref db="MetaCyc" id="PWY-561" + name="Superpathway of glyoxylate cycle and fatty acid degradation"/> + <pathway-xref db="KEGG" id="00720+1.3.5.1" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="MetaCyc" id="PWY-5690" name="TCA cycle II (plants and fungi)"/> + <pathway-xref db="MetaCyc" id="PWY-7254" name="TCA cycle VII (acetate-producers)"/> + <pathway-xref db="MetaCyc" id="PWY-6969" + name="TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)"/> + <pathway-xref db="MetaCyc" id="PWY-6728" name="Methylaspartate cycle"/> + <pathway-xref db="MetaCyc" id="PWY-4302" + name="Aerobic respiration III (alternative oxidase pathway)"/> + <pathway-xref db="MetaCyc" id="PWY-7279" name="Aerobic respiration II (cytochrome c) (yeast)"/> + <pathway-xref db="MetaCyc" id="PWY-3781" name="Aerobic respiration I (cytochrome c)"/> + </entry> + <models> + <model ac="TIGR01812" + desc="sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit" + name="TIGR01812"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="7" score="828.8" evalue="4.7E-250" hmm-start="1" + hmm-end="568" hmm-length="0" start="7" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.6E-37" score="127.8"> + <signature ac="G3DSA:3.90.700.10"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="1y0pA03"/> + <model ac="1jnrA02"/> + <model ac="1chuA02"/> + <model ac="2bs2A02"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="352" env-start="230" score="126.6" evalue="3.6E-37" hmm-start="1" + hmm-end="107" hmm-length="0" start="234" end="352"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="9.1E-39" score="131.9"> + <signature ac="G3DSA:1.20.58.100"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="2bs2A03"/> + <model ac="1kf6A03"/> + <model ac="1knrA03"/> + <model ac="2h88A03"/> + <model ac="2wdqA03"/> + <model ac="1jnrA03"/> + <model ac="1chuA03"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="541" env-start="423" score="131.2" evalue="1.5E-38" hmm-start="4" + hmm-end="115" hmm-length="0" start="426" end="537"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.0E-106" score="354.2"> + <signature ac="G3DSA:3.50.50.60"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="1chuA01"/> + <model ac="1fl2A01"/> + <model ac="1d5tA01"/> + <model ac="1xdiA02"/> + <model ac="1fecA02"/> + <model ac="1w4xA01"/> + <model ac="3c4nA01"/> + <model ac="1jnrA01"/> + <model ac="1xdiA01"/> + <model ac="1sezA01"/> + <model ac="2h88A01"/> + <model ac="1ju2A01"/> + <model ac="1trbA01"/> + <model ac="3qvpA01"/> + <model ac="2gv8A02"/> + <model ac="1fcdA02"/> + <model ac="1rsgB01"/> + <model ac="2yquA02"/> + <model ac="1b37A01"/> + <model ac="1kdgA01"/> + <model ac="2gf3A01"/> + <model ac="1mo9A01"/> + <model ac="1rsgA01"/> + <model ac="2gqwA01"/> + <model ac="1nhpA01"/> + <model ac="2pyxA01"/> + <model ac="3f8dA02"/> + <model ac="2r9zA02"/> + <model ac="2gqfA01"/> + <model ac="1vg0A01"/> + <model ac="1pj5A01"/> + <model ac="2i0zA01"/> + <model ac="1o94A03"/> + <model ac="1rp0A02"/> + <model ac="3gyjA01"/> + <model ac="2eq6A02"/> + <model ac="3dghA02"/> + <model ac="1fcdA01"/> + <model ac="1y0pA02"/> + <model ac="1pn0A01"/> + <model ac="1k0iA01"/> + <model ac="2zbwA01"/> + <model ac="1gteA03"/> + <model ac="1nhpA02"/> + <model ac="1xhcA01"/> + <model ac="2iidA02"/> + <model ac="1lqtA02"/> + <model ac="3c4aA01"/> + <model ac="3cgvA01"/> + <model ac="3dghA01"/> + <model ac="1mo9A02"/> + <model ac="1fl2A02"/> + <model ac="1onfA02"/> + <model ac="3dk9A01"/> + <model ac="2zbwA02"/> + <model ac="1m6iA01"/> + <model ac="2eq6A01"/> + <model ac="1ps9A03"/> + <model ac="1gteA04"/> + <model ac="2qaeA02"/> + <model ac="3fg2P02"/> + <model ac="2gqwA02"/> + <model ac="3dk9A02"/> + <model ac="3fbsB01"/> + <model ac="2gv8A01"/> + <model ac="3o0hA01"/> + <model ac="1s3eA01"/> + <model ac="1ryiA01"/> + <model ac="1m6iA02"/> + <model ac="3kkjA01"/> + <model ac="3fbsA02"/> + <model ac="1q1rA01"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="353" end="416"/> + <hmmer3-location env-end="420" env-start="1" score="353.6" evalue="5.9E-106" hmm-start="15" + hmm-end="329" hmm-length="0" start="2" end="233"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="8.5E-43" score="144.0"> + <signature ac="PIRSF000171" name="SDHA_APRA_LASPO"> + <entry ac="IPR030664" + desc="Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit" + name="SdhA/FrdA/AprA" type="FAMILY"/> + <models> + <model ac="PIRSF000171" name="SDHA_APRA_LASPO"/> + </models> + <signature-library-release library="PIRSF" version="3.01"/> + </signature> + <locations> + <hmmer3-location env-end="575" env-start="1" score="142.8" evalue="2.0E-42" hmm-start="3" + hmm-end="565" hmm-length="0" start="1" end="575"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="0.0" score="1214.6"> + <signature ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"> + <entry ac="IPR005884" desc="Fumarate reductase, flavoprotein subunit" name="Fum_red_fp" + type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0009061" name="anaerobic respiration"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <pathway-xref db="KEGG" id="00650+1.3.5.4" name="Butanoate metabolism"/> + <pathway-xref db="KEGG" id="00720+1.3.5.4" name="Carbon fixation pathways in prokaryotes"/> + <pathway-xref db="KEGG" id="00620+1.3.5.4" name="Pyruvate metabolism"/> + <pathway-xref db="MetaCyc" id="PWY-5913" name="Partial TCA cycle (obligate autotrophs)"/> + <pathway-xref db="KEGG" id="00020+1.3.5.4" name="Citrate cycle (TCA cycle)"/> + <pathway-xref db="MetaCyc" id="PWY-7384" + name="Anaerobic energy metabolism (invertebrates, mitochondrial)"/> + <pathway-xref db="MetaCyc" id="PWY-5392" name="Reductive TCA cycle II"/> + </entry> + <models> + <model ac="TIGR01176" desc="fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit" + name="TIGR01176"/> + </models> + <signature-library-release library="TIGRFAM" version="15.0"/> + </signature> + <locations> + <hmmer3-location env-end="582" env-start="3" score="1214.4" evalue="0.0" hmm-start="1" hmm-end="580" + hmm-length="0" start="3" end="582"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="4.2E-39" score="133.1"> + <signature ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"> + <entry ac="IPR015939" + desc="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal" + name="Fum_Rdtase/Succ_DH_flav-like_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="PF02910" desc="Fumarate reductase flavoprotein C-term" name="Succ_DH_flav_C"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="581" env-start="453" score="132.4" evalue="7.0E-39" hmm-start="1" + hmm-end="128" hmm-length="0" start="453" end="581"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="2.3E-18" score="65.2"> + <signature ac="G3DSA:4.10.80.40"> + <models> + <model ac="1kf6A04"/> + <model ac="2h88A04"/> + <model ac="2wdqA04"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="577" env-start="543" score="64.1" evalue="5.5E-18" hmm-start="1" + hmm-end="35" hmm-length="0" start="543" end="577"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.1E-115" score="386.8"> + <signature ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"> + <entry ac="IPR003953" desc="FAD-dependent oxidoreductase 2, FAD binding domain" name="FAD-binding_2" + type="DOMAIN"/> + <models> + <model ac="PF00890" desc="FAD binding domain" name="FAD_binding_2"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="397" env-start="7" score="386.8" evalue="1.1E-115" hmm-start="1" + hmm-end="417" hmm-length="0" start="7" end="397"/> + </locations> + </hmmer3-match> + <panther-match evalue="0.0" familyName="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632" name="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <panther-match evalue="0.0" familyName="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT" score="1520.5"> + <signature ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"> + <models> + <model ac="PTHR11632:SF50" name="FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT"/> + </models> + <signature-library-release library="PANTHER" version="10.0"/> + </signature> + <locations> + <panther-location start="1" end="584"/> + </locations> + </panther-match> + <patternscan-match> + <signature ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"> + <entry ac="IPR003952" desc="Fumarate reductase/succinate dehydrogenase, FAD-binding site" + name="FRD_SDH_FAD_BS" type="BINDING_SITE"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="PS00504" desc="Fumarate reductase / succinate dehydrogenase FAD-binding site." + name="FRD_SDH_FAD_BINDING"/> + </models> + <signature-library-release library="PROSITE_PATTERNS" version="20.113"/> + </signature> + <locations> + <patternscan-location level="STRONG" start="43" end="52"> + <alignment>RSHTvaAeGG</alignment> + </patternscan-location> + </locations> + </patternscan-match> + <superfamilyhmmer3-match evalue="2.27E-71"> + <signature ac="SSF51905" name="FAD/NAD(P)-binding domain"> + <entry ac="IPR023753" desc="FAD/NAD(P)-binding domain" name="FAD/NAD-binding_dom" type="DOMAIN"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + </entry> + <models> + <model ac="0048494" name="FAD/NAD(P)-binding domain"/> + <model ac="0052964" name="FAD/NAD(P)-binding domain"/> + <model ac="0038468" name="FAD/NAD(P)-binding domain"/> + <model ac="0050363" name="FAD/NAD(P)-binding domain"/> + <model ac="0052600" name="FAD/NAD(P)-binding domain"/> + <model ac="0048009" name="FAD/NAD(P)-binding domain"/> + <model ac="0045798" name="FAD/NAD(P)-binding domain"/> + <model ac="0053857" name="FAD/NAD(P)-binding domain"/> + <model ac="0052313" name="FAD/NAD(P)-binding domain"/> + <model ac="0047270" name="FAD/NAD(P)-binding domain"/> + <model ac="0045519" name="FAD/NAD(P)-binding domain"/> + <model ac="0048583" name="FAD/NAD(P)-binding domain"/> + <model ac="0044705" name="FAD/NAD(P)-binding domain"/> + <model ac="0050364" name="FAD/NAD(P)-binding domain"/> + <model ac="0050960" name="FAD/NAD(P)-binding domain"/> + <model ac="0046270" name="FAD/NAD(P)-binding domain"/> + <model ac="0047022" name="FAD/NAD(P)-binding domain"/> + <model ac="0036889" name="FAD/NAD(P)-binding domain"/> + <model ac="0047564" name="FAD/NAD(P)-binding domain"/> + <model ac="0040688" name="FAD/NAD(P)-binding domain"/> + <model ac="0046274" name="FAD/NAD(P)-binding domain"/> + <model ac="0036016" name="FAD/NAD(P)-binding domain"/> + <model ac="0046416" name="FAD/NAD(P)-binding domain"/> + <model ac="0037643" name="FAD/NAD(P)-binding domain"/> + <model ac="0054879" name="FAD/NAD(P)-binding domain"/> + <model ac="0044413" name="FAD/NAD(P)-binding domain"/> + <model ac="0038285" name="FAD/NAD(P)-binding domain"/> + <model ac="0040660" name="FAD/NAD(P)-binding domain"/> + <model ac="0040619" name="FAD/NAD(P)-binding domain"/> + <model ac="0046128" name="FAD/NAD(P)-binding domain"/> + <model ac="0046972" name="FAD/NAD(P)-binding domain"/> + <model ac="0046973" name="FAD/NAD(P)-binding domain"/> + <model ac="0047682" name="FAD/NAD(P)-binding domain"/> + <model ac="0040602" name="FAD/NAD(P)-binding domain"/> + <model ac="0047271" name="FAD/NAD(P)-binding domain"/> + <model ac="0040049" name="FAD/NAD(P)-binding domain"/> + <model ac="0052032" name="FAD/NAD(P)-binding domain"/> + <model ac="0052911" name="FAD/NAD(P)-binding domain"/> + <model ac="0036301" name="FAD/NAD(P)-binding domain"/> + <model ac="0046446" name="FAD/NAD(P)-binding domain"/> + <model ac="0042446" name="FAD/NAD(P)-binding domain"/> + <model ac="0044098" name="FAD/NAD(P)-binding domain"/> + <model ac="0047029" name="FAD/NAD(P)-binding domain"/> + <model ac="0048584" name="FAD/NAD(P)-binding domain"/> + <model ac="0052926" name="FAD/NAD(P)-binding domain"/> + <model ac="0048200" name="FAD/NAD(P)-binding domain"/> + <model ac="0036654" name="FAD/NAD(P)-binding domain"/> + <model ac="0048365" name="FAD/NAD(P)-binding domain"/> + <model ac="0048045" name="FAD/NAD(P)-binding domain"/> + <model ac="0035989" name="FAD/NAD(P)-binding domain"/> + <model ac="0045518" name="FAD/NAD(P)-binding domain"/> + <model ac="0036300" name="FAD/NAD(P)-binding domain"/> + <model ac="0048865" name="FAD/NAD(P)-binding domain"/> + <model ac="0049150" name="FAD/NAD(P)-binding domain"/> + <model ac="0046344" name="FAD/NAD(P)-binding domain"/> + <model ac="0046514" name="FAD/NAD(P)-binding domain"/> + <model ac="0047565" name="FAD/NAD(P)-binding domain"/> + <model ac="0054159" name="FAD/NAD(P)-binding domain"/> + <model ac="0046750" name="FAD/NAD(P)-binding domain"/> + <model ac="0038449" name="FAD/NAD(P)-binding domain"/> + <model ac="0046761" name="FAD/NAD(P)-binding domain"/> + <model ac="0046760" name="FAD/NAD(P)-binding domain"/> + <model ac="0036092" name="FAD/NAD(P)-binding domain"/> + <model ac="0047133" name="FAD/NAD(P)-binding domain"/> + <model ac="0039664" name="FAD/NAD(P)-binding domain"/> + <model ac="0041341" name="FAD/NAD(P)-binding domain"/> + <model ac="0041940" name="FAD/NAD(P)-binding domain"/> + <model ac="0048199" name="FAD/NAD(P)-binding domain"/> + <model ac="0046751" name="FAD/NAD(P)-binding domain"/> + <model ac="0050961" name="FAD/NAD(P)-binding domain"/> + <model ac="0045881" name="FAD/NAD(P)-binding domain"/> + <model ac="0043577" name="FAD/NAD(P)-binding domain"/> + <model ac="0047068" name="FAD/NAD(P)-binding domain"/> + <model ac="0053322" name="FAD/NAD(P)-binding 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type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="0035988" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0048345" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0052031" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0040048" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + <model ac="0039663" + name="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="444" end="590"/> + </locations> + </superfamilyhmmer3-match> + <superfamilyhmmer3-match evalue="6.88E-43"> + <signature ac="SSF56425" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"> + <entry ac="IPR027477" + desc="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" + name="Succ_DH/fumarate_Rdtase_cat" type="DOMAIN"/> + <models> + <model ac="0039665" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0052033" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036733" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0036265" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0040050" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0035990" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0041342" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + <model ac="0042899" + name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/> + </models> + <signature-library-release library="SUPERFAMILY" version="1.75"/> + </signature> + <locations> + <superfamilyhmmer3-location start="227" end="358"/> + </locations> + </superfamilyhmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="abfa044baa298f169ea62ac6b48e1185">MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES</sequence> + <xref desc="SGRT_ECOLI Putative inhibitor of glucose uptake transporter SgrT OS=Escherichia coli (strain K12) GN=sgrT PE=1 SV=1" + db="sp" id="C1P5Z7" name="Putative inhibitor of glucose uptake transporter SgrT"/> + <matches> + <hmmer3-match evalue="8.8E-12" score="44.3"> + <signature ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"> + <entry ac="IPR031767" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT" type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0046325" + name="negative regulation of glucose import"/> + </entry> + <models> + <model ac="PF15894" desc="Inhibitor of glucose uptake transporter SgrT" name="SgrT"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="41" env-start="1" score="44.0" evalue="1.0E-11" hmm-start="2" hmm-end="39" + hmm-length="0" start="2" end="37"/> + </locations> + </hmmer3-match> + </matches> + </protein> + <protein> + <sequence md5="9ec8e26fcf5c160f533bf9a69dec0212">MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI</sequence> + <xref desc="DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1" + db="sp" id="P00370" name="NADP-specific glutamate dehydrogenase"/> + <matches> + <fingerprints-match evalue="2.5E-33" graphscan="IIII"> + <signature ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" + name="GLFDHDRGNASE"> + <entry ac="IPR006095" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase" + name="Glu/Leu/Phe/Val_DH" type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" + name="cellular amino acid metabolic process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + </entry> + <models> + <model ac="PR00082" desc="Glutamate/leucine/phenylalanine/valine dehydrogenase signature" + name="GLFDHDRGNASE"/> + </models> + <signature-library-release library="PRINTS" version="42.0"/> + </signature> + <locations> + <fingerprints-location motifNumber="4" pvalue="1.31E-6" score="64.64" start="372" end="383"/> + <fingerprints-location motifNumber="1" pvalue="3.9E-10" score="63.43" start="114" end="128"/> + <fingerprints-location motifNumber="3" pvalue="6.51E-10" score="43.54" start="235" end="255"/> + <fingerprints-location motifNumber="2" pvalue="6.22E-15" score="57.39" start="193" end="215"/> + </locations> + </fingerprints-match> + <hmmer2-match evalue="2.0E-93" score="326.3"> + <signature ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" + name="ELFV_dehydrog"> + <entry ac="IPR006096" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" + name="Glu/Leu/Phe/Val_DH_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" + name="cellular amino acid metabolic process"/> + </entry> + <models> + <model ac="SM00839" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" + name="ELFV_dehydrog"/> + </models> + <signature-library-release library="SMART" version="6.2"/> + </signature> + <locations> + <hmmer2-location score="326.3" evalue="2.0E-93" hmm-start="1" hmm-end="265" hmm-length="0" + start="204" end="445"/> + </locations> + </hmmer2-match> + <hmmer3-match evalue="3.9E-61" score="204.1"> + <signature ac="G3DSA:3.40.192.10"> + <models> + <model ac="1vi2A01"/> + <model ac="2hk9A01"/> + <model ac="2d5cA01"/> + <model ac="1c1dA01"/> + <model ac="1gtmA01"/> + <model ac="3o8qA01"/> + <model ac="1lehA01"/> + <model ac="3donA01"/> + <model ac="1a4iA02"/> + <model ac="1bgvA02"/> + <model ac="1edzA02"/> + <model ac="1npyA01"/> + <model ac="1p77A01"/> + </models> + <signature-library-release library="GENE3D" version="3.5.0"/> + </signature> + <locations> + <hmmer3-location env-end="190" env-start="55" score="202.7" evalue="1.0E-60" hmm-start="2" + hmm-end="134" hmm-length="0" start="68" end="188"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="9.5E-88" score="293.6"> + <signature ac="PF00208" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" + name="ELFV_dehydrog"> + <entry ac="IPR006096" desc="Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" + name="Glu/Leu/Phe/Val_DH_C" type="DOMAIN"> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016491" name="oxidoreductase activity"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0006520" + name="cellular amino acid metabolic process"/> + </entry> + <models> + <model ac="PF00208" desc="Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" + name="ELFV_dehydrog"/> + </models> + <signature-library-release library="PFAM" version="28.0"/> + </signature> + <locations> + <hmmer3-location env-end="445" env-start="202" score="293.2" evalue="1.3E-87" hmm-start="1" + hmm-end="243" hmm-length="0" start="202" end="445"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.6E-114" score="380.5"> + <signature ac="PIRSF000185" name="Glu_DH"> + <entry ac="IPR014362" desc="Glutamate dehydrogenase" name="Glu_DH" type="FAMILY"> + <go-xref category="BIOLOGICAL_PROCESS" db="GO" id="GO:0055114" + name="oxidation-reduction process"/> + <go-xref category="MOLECULAR_FUNCTION" db="GO" id="GO:0016639" + name="oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor"/> + </entry> + <models> + <model ac="PIRSF000185" name="Glu_DH"/> + </models> + <signature-library-release library="PIRSF" version="3.01"/> + </signature> + <locations> + <hmmer3-location env-end="447" env-start="22" score="380.3" evalue="1.8E-114" hmm-start="23" + hmm-end="446" hmm-length="0" start="22" end="447"/> + </locations> + </hmmer3-match> + <hmmer3-match evalue="1.1E-63" score="213.8"> + <signature ac="G3DSA:3.40.50.720"> + <entry ac="IPR016040" desc="NAD(P)-binding domain" name="NAD(P)-bd_dom" type="DOMAIN"/> + <models> + <model ac="1kolA02"/> + <model ac="1kbzA01"/> + <model ac="1evyA01"/> + <model ac="1gtmA02"/> + <model ac="1gdhA02"/> + <model ac="2a4kB01"/> + <model ac="1xdwA02"/> + <model ac="2bh9A01"/> + <model ac="1xq1A00"/> + <model ac="1ooeA00"/> + <model ac="1v0jA01"/> + <model ac="2zydB01"/> + <model 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