diff tool_dependencies.xml @ 6:15f5a3074012 draft

Added snippy core and static binaries for linux and mac.

--- a/tool_dependencies.xml	Tue Jun 07 03:41:47 2016 -0400
+++ b/tool_dependencies.xml	Thu Jun 09 20:15:42 2016 -0400
@@ -1,24 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="snippy" version="3.0">
-        <repository changeset_revision="f8b5ebbd6121" name="package_snippy_3_0" owner="simon-gladman" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="samtools" version="1.2">
-        <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="freebayes" version="0_9_20_b040236">
-        <repository changeset_revision="059e6e3d99cc" name="package_freebayes_0_9_20_b040236" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="bwa" version="0.7.12">
-        <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="vcfftools" version="0.1.11">
-        <repository changeset_revision="710efaae2ff8" name="package_vcftools_0_1_11" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="snpeff" version="4.0">
-        <repository changeset_revision="792d8f4485fb" name="package_snpeff_4_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="vcflib" version="8a5602bf07">
-        <repository changeset_revision="7e67466b033e" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="d23c3f138c54" name="package_snippy_3_0" owner="simon-gladman" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>