Mercurial > repos > simon-gladman > velvet_optimiser
annotate INSTALL.txt @ 0:b559512bebcc draft
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| author | simon-gladman |
|---|---|
| date | Tue, 05 Feb 2013 19:18:47 -0500 |
| parents | |
| children |
| rev | line source |
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| 0 | 1 INSTALL.txt |
| 2 | |
| 3 Velvet Optimiser Galaxy Toolshed Wrapper. | |
| 4 | |
| 5 REQUIREMENTS: | |
| 6 | |
| 7 The following must be installed and available in the PATH | |
| 8 | |
| 9 Perl >= 5.8 | |
| 10 BioPerl >= 1.4 | |
| 11 | |
| 12 velveth and velvetg (version > 1.1) | |
| 13 http://www.ebi.ac.uk/~zerbino/velvet | |
| 14 | |
| 15 Velvet Optimiser version 2.2.5 or above. | |
| 16 http://bioinformatics.net.au/software.shtml | |
| 17 | |
| 18 TESTS: | |
| 19 | |
| 20 The following files must be placed in Galaxy's test-data directory: | |
| 21 - vopt_test_reads.dat | |
| 22 - vopt_test_contigs.dat | |
| 23 |