Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/conf.txt @ 1:03815b87eb65 draft
Uploaded
| author | siyuan |
|---|---|
| date | Fri, 21 Feb 2014 18:08:37 -0500 |
| parents | acc2ca1a3ba4 |
| children | 74f6c4fcab2f |
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| 0:acc2ca1a3ba4 | 1:03815b87eb65 |
|---|---|
| 19 txcat_file = /RIS/home/verhaakgroup/PRADA/hg19broad/Ensembl64_primary_transcript.txt | 19 txcat_file = /RIS/home/verhaakgroup/PRADA/hg19broad/Ensembl64_primary_transcript.txt |
| 20 | 20 |
| 21 --PBS-- | 21 --PBS-- |
| 22 -M = szheng2@mdanderson.org | 22 -M = szheng2@mdanderson.org |
| 23 -q = long | 23 -q = long |
| 24 -l = nodes=1:ppn=i2,walltime=120:00:00 #nodes and ppn are required | 24 -l = nodes=1:ppn=12,walltime=120:00:00 #nodes and ppn are required |
| 25 | 25 |
| 26 --BWA aln-- | 26 --BWA aln-- |
| 27 -t = 2 #This should be equal to the number of ppn | 27 -t = 2 #This should be equal to the number of ppn |
| 28 | 28 |
| 29 --BWA samse-- | 29 --BWA samse-- |