Mercurial > repos > siyuan > prada
diff pyPRADA_1.2/tools/bwa-0.5.7-mh/main.h @ 0:acc2ca1a3ba4
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author | siyuan |
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date | Thu, 20 Feb 2014 00:44:58 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pyPRADA_1.2/tools/bwa-0.5.7-mh/main.h Thu Feb 20 00:44:58 2014 -0500 @@ -0,0 +1,29 @@ +#ifndef BWA_MAIN_H +#define BWA_MAIN_H + +#ifdef __cplusplus +extern "C" { +#endif + + int bwa_fa2pac(int argc, char *argv[]); + int bwa_pac_rev(int argc, char *argv[]); + int bwa_pac2cspac(int argc, char *argv[]); + int bwa_pac2bwt(int argc, char *argv[]); + int bwa_bwtupdate(int argc, char *argv[]); + int bwa_bwt2sa(int argc, char *argv[]); + int bwa_index(int argc, char *argv[]); + int bwa_aln(int argc, char *argv[]); + int bwt_bwtgen_main(int argc, char *argv[]); + + int bwa_sai2sam_se(int argc, char *argv[]); + int bwa_sai2sam_pe(int argc, char *argv[]); + + int bwa_stdsw(int argc, char *argv[]); + + int bwa_bwtsw2(int argc, char *argv[]); + +#ifdef __cplusplus +} +#endif + +#endif