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diff pyPRADA_1.2/tools/samtools-0.1.16/errmod.h @ 0:acc2ca1a3ba4

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author siyuan
date Thu, 20 Feb 2014 00:44:58 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pyPRADA_1.2/tools/samtools-0.1.16/errmod.h	Thu Feb 20 00:44:58 2014 -0500
@@ -0,0 +1,24 @@
+#ifndef ERRMOD_H
+#define ERRMOD_H
+
+#include <stdint.h>
+
+struct __errmod_coef_t;
+
+typedef struct {
+	double depcorr;
+	struct __errmod_coef_t *coef;
+} errmod_t;
+
+errmod_t *errmod_init(float depcorr);
+void errmod_destroy(errmod_t *em);
+
+/*
+	n: number of bases
+	m: maximum base
+	bases[i]: qual:6, strand:1, base:4
+	q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
+int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
+
+#endif