Mercurial > repos > siyuan > prada
view pyPRADA_1.2/tools/bwa-0.5.7-mh/utils.c @ 3:f17965495ec9 draft default tip
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author | siyuan |
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date | Tue, 11 Mar 2014 12:14:01 -0400 |
parents | acc2ca1a3ba4 |
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/* The MIT License Copyright (c) 2008 Genome Research Ltd (GRL). Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ /* Contact: Heng Li <lh3@sanger.ac.uk> */ #include <stdio.h> #include <stdarg.h> #include <stdlib.h> #include <string.h> #include <zlib.h> #include "utils.h" FILE *err_xopen_core(const char *func, const char *fn, const char *mode) { FILE *fp = 0; if (strcmp(fn, "-") == 0) return (strstr(mode, "r"))? stdin : stdout; if ((fp = fopen(fn, mode)) == 0) { fprintf(stderr, "[%s] fail to open file '%s'. Abort!\n", func, fn); abort(); } return fp; } gzFile err_xzopen_core(const char *func, const char *fn, const char *mode) { gzFile fp; if (strcmp(fn, "-") == 0) return gzdopen(fileno((strstr(mode, "r"))? stdin : stdout), mode); if ((fp = gzopen(fn, mode)) == 0) { fprintf(stderr, "[%s] fail to open file '%s'. Abort!\n", func, fn); abort(); } return fp; } void err_fatal(const char *header, const char *fmt, ...) { va_list args; va_start(args, fmt); fprintf(stderr, "[%s] ", header); vfprintf(stderr, fmt, args); fprintf(stderr, " Abort!\n"); va_end(args); abort(); } void err_fatal_simple_core(const char *func, const char *msg) { fprintf(stderr, "[%s] %s Abort!\n", func, msg); abort(); }