annotate Galaxy-Workflow-DNAse-footprints-singlesample-bamInput_wellington_hint_piq.ga @ 3:43e4ba4796c1 draft

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author sjung
date Wed, 24 May 2017 00:35:42 -0400
parents 2d6315e241e4
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2d6315e241e4 Uploaded
sjung
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diff changeset
217 "input_connections": {
2d6315e241e4 Uploaded
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
220 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
221 }
2d6315e241e4 Uploaded
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diff changeset
222 },
2d6315e241e4 Uploaded
sjung
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diff changeset
223 "inputs": [],
2d6315e241e4 Uploaded
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diff changeset
224 "label": null,
2d6315e241e4 Uploaded
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diff changeset
225 "name": "Compute",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
226 "outputs": [
2d6315e241e4 Uploaded
sjung
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diff changeset
227 {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
228 "name": "out_file1",
2d6315e241e4 Uploaded
sjung
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diff changeset
229 "type": "input"
2d6315e241e4 Uploaded
sjung
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diff changeset
230 }
2d6315e241e4 Uploaded
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diff changeset
231 ],
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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235 },
2d6315e241e4 Uploaded
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diff changeset
236 "post_job_actions": {
2d6315e241e4 Uploaded
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diff changeset
237 "HideDatasetActionout_file1": {
2d6315e241e4 Uploaded
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diff changeset
238 "action_arguments": {},
2d6315e241e4 Uploaded
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diff changeset
239 "action_type": "HideDatasetAction",
2d6315e241e4 Uploaded
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diff changeset
240 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
241 }
2d6315e241e4 Uploaded
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diff changeset
242 },
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
sjung
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
247 "type": "tool",
2d6315e241e4 Uploaded
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diff changeset
248 "user_outputs": [],
2d6315e241e4 Uploaded
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diff changeset
249 "uuid": "None"
2d6315e241e4 Uploaded
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diff changeset
250 },
2d6315e241e4 Uploaded
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diff changeset
251 "7": {
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
253 "id": 7,
2d6315e241e4 Uploaded
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diff changeset
254 "input_connections": {
2d6315e241e4 Uploaded
sjung
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
257 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
258 }
2d6315e241e4 Uploaded
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diff changeset
259 },
2d6315e241e4 Uploaded
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diff changeset
260 "inputs": [],
2d6315e241e4 Uploaded
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2d6315e241e4 Uploaded
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diff changeset
262 "name": "Filter",
2d6315e241e4 Uploaded
sjung
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diff changeset
263 "outputs": [
2d6315e241e4 Uploaded
sjung
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diff changeset
264 {
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parents:
diff changeset
265 "name": "out_file1",
2d6315e241e4 Uploaded
sjung
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diff changeset
266 "type": "input"
2d6315e241e4 Uploaded
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diff changeset
267 }
2d6315e241e4 Uploaded
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diff changeset
268 ],
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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272 },
2d6315e241e4 Uploaded
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273 "post_job_actions": {
2d6315e241e4 Uploaded
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diff changeset
274 "HideDatasetActionout_file1": {
2d6315e241e4 Uploaded
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diff changeset
275 "action_arguments": {},
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
276 "action_type": "HideDatasetAction",
2d6315e241e4 Uploaded
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diff changeset
277 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
278 }
2d6315e241e4 Uploaded
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diff changeset
279 },
2d6315e241e4 Uploaded
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diff changeset
280 "tool_errors": null,
2d6315e241e4 Uploaded
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diff changeset
281 "tool_id": "Filter1",
2d6315e241e4 Uploaded
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diff changeset
282 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"header_lines\": \"\\\"0\\\"\", \"cond\": \"\\\"c4<-400\\\"\", \"__page__\": 0}",
2d6315e241e4 Uploaded
sjung
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diff changeset
283 "tool_version": "1.1.0",
2d6315e241e4 Uploaded
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diff changeset
284 "type": "tool",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
285 "user_outputs": [],
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
286 "uuid": "None"
2d6315e241e4 Uploaded
sjung
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diff changeset
287 },
2d6315e241e4 Uploaded
sjung
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diff changeset
288 "8": {
2d6315e241e4 Uploaded
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diff changeset
289 "annotation": "10",
2d6315e241e4 Uploaded
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diff changeset
290 "id": 8,
2d6315e241e4 Uploaded
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diff changeset
291 "input_connections": {
2d6315e241e4 Uploaded
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292 "input": {
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
294 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
295 }
2d6315e241e4 Uploaded
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diff changeset
296 },
2d6315e241e4 Uploaded
sjung
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diff changeset
297 "inputs": [],
2d6315e241e4 Uploaded
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diff changeset
298 "label": null,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
299 "name": "Cut",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
300 "outputs": [
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
301 {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
302 "name": "out_file1",
2d6315e241e4 Uploaded
sjung
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diff changeset
303 "type": "tabular"
2d6315e241e4 Uploaded
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304 }
2d6315e241e4 Uploaded
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305 ],
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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diff changeset
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309 },
2d6315e241e4 Uploaded
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310 "post_job_actions": {
2d6315e241e4 Uploaded
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diff changeset
311 "HideDatasetActionout_file1": {
2d6315e241e4 Uploaded
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diff changeset
312 "action_arguments": {},
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
313 "action_type": "HideDatasetAction",
2d6315e241e4 Uploaded
sjung
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diff changeset
314 "output_name": "out_file1"
2d6315e241e4 Uploaded
sjung
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diff changeset
315 }
2d6315e241e4 Uploaded
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diff changeset
316 },
2d6315e241e4 Uploaded
sjung
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diff changeset
317 "tool_errors": null,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
318 "tool_id": "Cut1",
2d6315e241e4 Uploaded
sjung
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diff changeset
319 "tool_state": "{\"columnList\": \"\\\"c1,c2,c3\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
2d6315e241e4 Uploaded
sjung
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diff changeset
320 "tool_version": "1.0.1",
2d6315e241e4 Uploaded
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parents:
diff changeset
321 "type": "tool",
2d6315e241e4 Uploaded
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parents:
diff changeset
322 "user_outputs": [],
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
323 "uuid": "None"
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
324 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
325 "9": {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
326 "annotation": "11",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
327 "id": 9,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
328 "input_connections": {
2d6315e241e4 Uploaded
sjung
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diff changeset
329 "input": {
2d6315e241e4 Uploaded
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diff changeset
330 "id": 8,
2d6315e241e4 Uploaded
sjung
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diff changeset
331 "output_name": "out_file1"
2d6315e241e4 Uploaded
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diff changeset
332 }
2d6315e241e4 Uploaded
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diff changeset
333 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
334 "inputs": [],
2d6315e241e4 Uploaded
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diff changeset
335 "label": null,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
336 "name": "Filter",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
337 "outputs": [
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
338 {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
339 "name": "out_file1",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
340 "type": "input"
2d6315e241e4 Uploaded
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parents:
diff changeset
341 }
2d6315e241e4 Uploaded
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parents:
diff changeset
342 ],
2d6315e241e4 Uploaded
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diff changeset
343 "position": {
2d6315e241e4 Uploaded
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diff changeset
344 "left": 779.8806762695312,
2d6315e241e4 Uploaded
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345 "top": 221.44318389892578
2d6315e241e4 Uploaded
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346 },
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
sjung
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diff changeset
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2d6315e241e4 Uploaded
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parents:
diff changeset
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2d6315e241e4 Uploaded
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diff changeset
350 "newtype": "bed"
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
351 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
352 "action_type": "ChangeDatatypeAction",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
353 "output_name": "out_file1"
2d6315e241e4 Uploaded
sjung
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diff changeset
354 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
355 "HideDatasetActionout_file1": {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
356 "action_arguments": {},
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
357 "action_type": "HideDatasetAction",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
358 "output_name": "out_file1"
2d6315e241e4 Uploaded
sjung
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diff changeset
359 }
2d6315e241e4 Uploaded
sjung
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diff changeset
360 },
2d6315e241e4 Uploaded
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diff changeset
361 "tool_errors": null,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
362 "tool_id": "Filter1",
2d6315e241e4 Uploaded
sjung
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diff changeset
363 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"header_lines\": \"\\\"0\\\"\", \"cond\": \"\\\"c1=='chr1' or c1=='chr2'or c1=='chr3' or c1=='chr4' or c1=='chr5' or c1=='chr6' or c1=='chr7' or c1=='chr8' or c1=='chr9' or c1=='chr10' or c1=='chr11' or c1=='chr12' or c1=='chr13' or c1=='chr14' or c1=='chr15' or c1=='chr16' or c1=='chr17' or c1=='chr18' or c1=='chr19' or c1=='chr20' or c1=='chr21' or c1=='chr22' or c1=='chrX' or c1=='chrY'\\\"\", \"__page__\": 0}",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
364 "tool_version": "1.1.0",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
365 "type": "tool",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
366 "user_outputs": [],
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
367 "uuid": "None"
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
368 },
2d6315e241e4 Uploaded
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diff changeset
369 "10": {
2d6315e241e4 Uploaded
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diff changeset
370 "annotation": "12",
2d6315e241e4 Uploaded
sjung
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diff changeset
371 "id": 10,
2d6315e241e4 Uploaded
sjung
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diff changeset
372 "input_connections": {
2d6315e241e4 Uploaded
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2d6315e241e4 Uploaded
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diff changeset
374 "id": 0,
2d6315e241e4 Uploaded
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diff changeset
375 "output_name": "output"
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
376 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
377 "bed_file": {
2d6315e241e4 Uploaded
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diff changeset
378 "id": 9,
2d6315e241e4 Uploaded
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parents:
diff changeset
379 "output_name": "out_file1"
2d6315e241e4 Uploaded
sjung
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diff changeset
380 }
2d6315e241e4 Uploaded
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diff changeset
381 },
2d6315e241e4 Uploaded
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parents:
diff changeset
382 "inputs": [],
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
383 "label": null,
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
384 "name": "Wellington Footprints",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
385 "outputs": [
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
386 {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
387 "name": "output",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
388 "type": "bed"
2d6315e241e4 Uploaded
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diff changeset
389 }
2d6315e241e4 Uploaded
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diff changeset
390 ],
2d6315e241e4 Uploaded
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diff changeset
391 "position": {
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
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2d6315e241e4 Uploaded
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2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
sjung
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diff changeset
396 "HideDatasetActionoutput": {
2d6315e241e4 Uploaded
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parents:
diff changeset
397 "action_arguments": {},
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
398 "action_type": "HideDatasetAction",
2d6315e241e4 Uploaded
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parents:
diff changeset
399 "output_name": "output"
2d6315e241e4 Uploaded
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diff changeset
400 }
2d6315e241e4 Uploaded
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diff changeset
401 },
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
402 "tool_errors": null,
2d6315e241e4 Uploaded
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parents:
diff changeset
403 "tool_id": "wellington_footprints",
2d6315e241e4 Uploaded
sjung
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diff changeset
404 "tool_state": "{\"__page__\": 0, \"bam_file\": \"null\", \"bed_file\": \"null\", \"__rerun_remap_job_id__\": null, \"fdrlimit\": \"\\\"0\\\"\"}",
2d6315e241e4 Uploaded
sjung
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diff changeset
405 "tool_version": "0.2.5",
2d6315e241e4 Uploaded
sjung
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diff changeset
406 "type": "tool",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
407 "user_outputs": [],
2d6315e241e4 Uploaded
sjung
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diff changeset
408 "uuid": "None"
2d6315e241e4 Uploaded
sjung
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diff changeset
409 },
2d6315e241e4 Uploaded
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diff changeset
410 "11": {
2d6315e241e4 Uploaded
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diff changeset
411 "annotation": "13",
2d6315e241e4 Uploaded
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diff changeset
412 "id": 11,
2d6315e241e4 Uploaded
sjung
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diff changeset
413 "input_connections": {
2d6315e241e4 Uploaded
sjung
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diff changeset
414 "input": {
2d6315e241e4 Uploaded
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415 "id": 0,
2d6315e241e4 Uploaded
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diff changeset
416 "output_name": "output"
2d6315e241e4 Uploaded
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diff changeset
417 },
2d6315e241e4 Uploaded
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diff changeset
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2d6315e241e4 Uploaded
sjung
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diff changeset
419 "id": 9,
2d6315e241e4 Uploaded
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diff changeset
420 "output_name": "out_file1"
2d6315e241e4 Uploaded
sjung
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diff changeset
421 }
2d6315e241e4 Uploaded
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diff changeset
422 },
2d6315e241e4 Uploaded
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diff changeset
423 "inputs": [],
2d6315e241e4 Uploaded
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diff changeset
424 "label": null,
2d6315e241e4 Uploaded
sjung
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diff changeset
425 "name": "Hint",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
426 "outputs": [
2d6315e241e4 Uploaded
sjung
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diff changeset
427 {
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
428 "name": "output",
2d6315e241e4 Uploaded
sjung
parents:
diff changeset
429 "type": "bed"
2d6315e241e4 Uploaded
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diff changeset
430 }
2d6315e241e4 Uploaded
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diff changeset
431 ],
2d6315e241e4 Uploaded
sjung
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diff changeset
432 "position": {
2d6315e241e4 Uploaded
sjung
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