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1 <tool id="hint" name="Hint" version="HINT: 1.1.1">
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2 <description> predicts TFBSs given open chromatin data </description>
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3 <requirements>
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4 <requirement type="package">pymodules</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 hint_wrapper.py
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8 --input $input
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9 --region $region
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10 --out-dir $output.extra_files_path
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11 --output $output
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12 </command>
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13 <inputs>
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14 <param format="bam" help="" name="input" optional="false" type="data" label="Input BAM"/>
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15 <param format="bed" help="" name="region" optional="false" type="data" label="Input BED"/>
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16 </inputs>
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17 <outputs>
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18 <data format="bed" label="${tool.name} on ${on_string}" name="output"/>
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19 </outputs>
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20 <help>
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21 </help>
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22 </tool>
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