Mercurial > repos > sjung > bdds

changeset 6:8dca27fe444a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author sjung
date Wed, 24 May 2017 00:36:30 -0400
parents f77a3f2876c3
children 9920c489a5c3
files piq.xml
diffstat 1 files changed, 22 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/piq.xml	Wed May 24 00:36:30 2017 -0400
@@ -0,0 +1,22 @@
+<tool id="piq" name="piq" version="PIQ: 1.3">
+    <description> identify TFBSs at corresponding motifs from DNase-Seq experiments </description>
+    <requirements>
+      <requirement type="package">pymodules</requirement>
+      <requirement type="package" version="3.3.3">R</requirement>
+      <requirement type="package">piq</requirement>
+    </requirements>
+    <command interpreter="python">
+      piq_wrapper.py
+      --input $input
+      --out-dir $output.extra_files_path
+      --output $output
+    </command>
+      <inputs>
+         <param format="bam" help="" name="input" optional="false" type="data"/>
+      </inputs>
+      <outputs>
+         <data format="csv" label="${tool.name} on ${on_string}" name="output"/>
+      </outputs>
+      <help>
+      </help>
+</tool>