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+ − 133 <table border="0" width="100%">
+ − 134 <colgroup>
+ − 135 <col width="5*">
+ − 136 <col width="5*">
+ − 137 </colgroup>
+ − 138 <tr height="200" valign="top">
+ − 139 <td><font face="Times New Roman" size="8">
+ − 140 <b><a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" style="color:Black;text-decoration:none" title="miRDeep2 homepage at MDC-Berlin" >miRDeep2</a></b>
+ − 141
+ − 142
+ − 143 <br>
+ − 144 <br>
+ − 145 </font></td>
+ − 146 <td> <a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" >
+ − 147 <img src="http://www.mdc-berlin.de/de/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep.jpg" style="border-style: none" name="precursor miRNA" title="miRDeep2 homepage at MDC-Berlin" align=right alt="miRDeep home"/></a></td>
+ − 148 </tr>
+ − 149 </table>
+ − 150
+ − 151 <br>
+ − 152 <br>
+ − 153 <br><h2></h2><br>
+ − 154 <font face="Times New Roman" size="2">
+ − 155 <table border="1">
+ − 156 <th><a href="" class="tooltip3">miRBase precursor id<span>Clicking this field will display a pdf of the structure and read signature of the miRNA.</span></a></th>
+ − 157
+ − 158 <th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the mature and star miRNAs.</span></a></th>
+ − 159
+ − 160 <th><a href="" class="tooltip3">mature read count(s)<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown.</span></a></th>
+ − 161
+ − 162 <th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list</span></a></th>
+ − 163
+ − 164 <th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">remaining reads<span>this is the number of reads that did not map to any of the mature and star sequences</span></a></th>
+ − 165
+ − 166 <th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome.</span></a></th>
+ − 167
+ − 168 <th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
+ − 169
+ − 170 <th><a href="" class="tooltip3">miRBase mature sequence(s)<span>this is/are the mature miRNA sequence(s) input to quantifier.pl.</span></a></th>
+ − 171
+ − 172 <th><a href="" class="tooltip3">miRBase star sequence(s)<span>this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl.</span></a></th>
+ − 173
+ − 174 <th><a href="" class="tooltip4">miRBase precursor sequence<span>this is the precursor miRNA sequence input to quantifier.pl.</span></a></th>
+ − 175
+ − 176 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-37.pdf">cel-mir-37</a></td>
+ − 177 <td>118250</td>
+ − 178 <td>
+ − 179
+ − 180
+ − 181 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 182 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-37" target="_blank">cel-miR-37</a></td><td><nobr>118131.00</nobr></td><td><nobr>676208.96</nobr></td></tr>
+ − 183 </table>
+ − 184
+ − 185 </td>
+ − 186
+ − 187
+ − 188 <td>
+ − 189 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 190 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 191 </table>
+ − 192
+ − 193 </td>
+ − 194
+ − 195
+ − 196
+ − 197 <td nowrap="nowrap">119</td>
+ − 198 <td> - </td>
+ − 199 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu&JOB_TITLE=cel-mir-37&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 200 <td><table><tr><td>ucaccgggugaacacuugcagu</td></tr></table></td>
+ − 201 <td><table><tr><td>-</td></tr></table></td>
+ − 202 <td>uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu</td>
+ − 203 </tr>
+ − 204 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-40.pdf">cel-mir-40</a></td>
+ − 205 <td>32947</td>
+ − 206 <td>
+ − 207
+ − 208
+ − 209 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 210 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-40" target="_blank">cel-miR-40</a></td><td><nobr>32878.00</nobr></td><td><nobr>188201.22</nobr></td></tr>
+ − 211 </table>
+ − 212
+ − 213 </td>
+ − 214
+ − 215
+ − 216 <td>
+ − 217 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 218 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 219 </table>
+ − 220
+ − 221 </td>
+ − 222
+ − 223
+ − 224
+ − 225 <td nowrap="nowrap">69</td>
+ − 226 <td> - </td>
+ − 227 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu&JOB_TITLE=cel-mir-40&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 228 <td><table><tr><td>ucaccggguguacaucagcuaa</td></tr></table></td>
+ − 229 <td><table><tr><td>-</td></tr></table></td>
+ − 230 <td>uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu</td>
+ − 231 </tr>
+ − 232 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-36.pdf">cel-mir-36</a></td>
+ − 233 <td>14535</td>
+ − 234 <td>
+ − 235
+ − 236
+ − 237 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 238 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-36" target="_blank">cel-miR-36</a></td><td><nobr>14483.00</nobr></td><td><nobr>82904.02</nobr></td></tr>
+ − 239 </table>
+ − 240
+ − 241 </td>
+ − 242
+ − 243
+ − 244 <td>
+ − 245 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 246 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 247 </table>
+ − 248
+ − 249 </td>
+ − 250
+ − 251
+ − 252
+ − 253 <td nowrap="nowrap">52</td>
+ − 254 <td> - </td>
+ − 255 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga&JOB_TITLE=cel-mir-36&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 256 <td><table><tr><td>ucaccgggugaaaauucgcaug</td></tr></table></td>
+ − 257 <td><table><tr><td>-</td></tr></table></td>
+ − 258 <td>caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga</td>
+ − 259 </tr>
+ − 260 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-229.pdf">cel-mir-229</a></td>
+ − 261 <td>4000</td>
+ − 262 <td>
+ − 263
+ − 264
+ − 265 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 266 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-229" target="_blank">cel-miR-229</a></td><td><nobr>4000.00</nobr></td><td><nobr>22896.92</nobr></td></tr>
+ − 267 </table>
+ − 268
+ − 269 </td>
+ − 270
+ − 271
+ − 272 <td>
+ − 273 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 274 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 275 </table>
+ − 276
+ − 277 </td>
+ − 278
+ − 279
+ − 280
+ − 281 <td nowrap="nowrap">0</td>
+ − 282 <td> - </td>
+ − 283 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg&JOB_TITLE=cel-mir-229&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 284 <td><table><tr><td>aaugacacugguuaucuuuuccaucg</td></tr></table></td>
+ − 285 <td><table><tr><td>-</td></tr></table></td>
+ − 286 <td>cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg</td>
+ − 287 </tr>
+ − 288 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-39.pdf">cel-mir-39</a></td>
+ − 289 <td>3852</td>
+ − 290 <td>
+ − 291
+ − 292
+ − 293 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 294 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-39" target="_blank">cel-miR-39</a></td><td><nobr>2994.00</nobr></td><td><nobr>17138.34</nobr></td></tr>
+ − 295 </table>
+ − 296
+ − 297 </td>
+ − 298
+ − 299
+ − 300 <td>
+ − 301 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 302 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 303 </table>
+ − 304
+ − 305 </td>
+ − 306
+ − 307
+ − 308
+ − 309 <td nowrap="nowrap">858</td>
+ − 310 <td> - </td>
+ − 311 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc&JOB_TITLE=cel-mir-39&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 312 <td><table><tr><td>ucaccggguguaaaucagcuug</td></tr></table></td>
+ − 313 <td><table><tr><td>-</td></tr></table></td>
+ − 314 <td>uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc</td>
+ − 315 </tr>
+ − 316 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-38.pdf">cel-mir-38</a></td>
+ − 317 <td>2131</td>
+ − 318 <td>
+ − 319
+ − 320
+ − 321 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 322 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-38" target="_blank">cel-miR-38</a></td><td><nobr>2123.00</nobr></td><td><nobr>12152.54</nobr></td></tr>
+ − 323 </table>
+ − 324
+ − 325 </td>
+ − 326
+ − 327
+ − 328 <td>
+ − 329 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 330 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 331 </table>
+ − 332
+ − 333 </td>
+ − 334
+ − 335
+ − 336
+ − 337 <td nowrap="nowrap">8</td>
+ − 338 <td> - </td>
+ − 339 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau&JOB_TITLE=cel-mir-38&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 340 <td><table><tr><td>ucaccgggagaaaaacuggagu</td></tr></table></td>
+ − 341 <td><table><tr><td>-</td></tr></table></td>
+ − 342 <td>ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau</td>
+ − 343 </tr>
+ − 344 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-41.pdf">cel-mir-41</a></td>
+ − 345 <td>164</td>
+ − 346 <td>
+ − 347
+ − 348
+ − 349 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 350 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-41" target="_blank">cel-miR-41</a></td><td><nobr>87.00</nobr></td><td><nobr>498.01</nobr></td></tr>
+ − 351 </table>
+ − 352
+ − 353 </td>
+ − 354
+ − 355
+ − 356 <td>
+ − 357 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+ − 358 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+ − 359 </table>
+ − 360
+ − 361 </td>
+ − 362
+ − 363
+ − 364
+ − 365 <td nowrap="nowrap">77</td>
+ − 366 <td> - </td>
+ − 367 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu&JOB_TITLE=cel-mir-41&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+ − 368 <td><table><tr><td>ucaccgggugaaaaaucaccua</td></tr></table></td>
+ − 369 <td><table><tr><td>-</td></tr></table></td>
+ − 370 <td>gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu</td>
+ − 371 </tr>
+ − 372 </table>
+ − 373 </body>
+ − 374 </html>
