Mercurial > repos > stemcellcommons > merging_workflows
comparison Merge_FASTQ.ga @ 0:5703e64e15e9 draft default tip
Initial upload
| author | stemcellcommons |
|---|---|
| date | Tue, 05 Dec 2017 14:58:39 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:5703e64e15e9 |
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| 1 { | |
| 2 "a_galaxy_workflow": "true", | |
| 3 "annotation": "{\n \"description\": \"Merges a list of FASTQ files into a single FASTQ.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"File to be merged\"\n }\n ]\n }\n}", | |
| 4 "format-version": "0.1", | |
| 5 "name": "Merge FASTQ", | |
| 6 "steps": { | |
| 7 "0": { | |
| 8 "annotation": "", | |
| 9 "content_id": null, | |
| 10 "id": 0, | |
| 11 "input_connections": {}, | |
| 12 "inputs": [ | |
| 13 { | |
| 14 "description": "", | |
| 15 "name": "Input Dataset Collection" | |
| 16 } | |
| 17 ], | |
| 18 "label": null, | |
| 19 "name": "Input dataset collection", | |
| 20 "outputs": [], | |
| 21 "position": { | |
| 22 "left": 161.5, | |
| 23 "top": 215.5 | |
| 24 }, | |
| 25 "tool_errors": null, | |
| 26 "tool_id": null, | |
| 27 "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}", | |
| 28 "tool_version": null, | |
| 29 "type": "data_collection_input", | |
| 30 "uuid": "38f167a0-9b63-4c15-92b8-15ade85b580b", | |
| 31 "workflow_outputs": [ | |
| 32 { | |
| 33 "label": null, | |
| 34 "output_name": "output", | |
| 35 "uuid": "2d4184c2-900b-435f-9850-fdd368909b74" | |
| 36 } | |
| 37 ] | |
| 38 }, | |
| 39 "1": { | |
| 40 "annotation": "", | |
| 41 "content_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", | |
| 42 "id": 1, | |
| 43 "input_connections": { | |
| 44 "input_list": { | |
| 45 "id": 0, | |
| 46 "output_name": "output" | |
| 47 } | |
| 48 }, | |
| 49 "inputs": [], | |
| 50 "label": null, | |
| 51 "name": "Collapse Collection", | |
| 52 "outputs": [ | |
| 53 { | |
| 54 "name": "output", | |
| 55 "type": "input" | |
| 56 } | |
| 57 ], | |
| 58 "position": { | |
| 59 "left": 488, | |
| 60 "top": 218 | |
| 61 }, | |
| 62 "post_job_actions": { | |
| 63 "ChangeDatatypeActionoutput": { | |
| 64 "action_arguments": { | |
| 65 "newtype": "fastq" | |
| 66 }, | |
| 67 "action_type": "ChangeDatatypeAction", | |
| 68 "output_name": "output" | |
| 69 }, | |
| 70 "RenameDatasetActionoutput": { | |
| 71 "action_arguments": { | |
| 72 "newname": "merged" | |
| 73 }, | |
| 74 "action_type": "RenameDatasetAction", | |
| 75 "output_name": "output" | |
| 76 } | |
| 77 }, | |
| 78 "tool_errors": null, | |
| 79 "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", | |
| 80 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_list\": \"null\", \"one_header\": \"\\\"False\\\"\", \"filename\": \"{\\\"add_name\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}", | |
| 81 "tool_version": "4.0", | |
| 82 "type": "tool", | |
| 83 "uuid": "e0e26825-a370-4e76-ac2f-e7e90d028ff4", | |
| 84 "workflow_outputs": [ | |
| 85 { | |
| 86 "label": null, | |
| 87 "output_name": "output", | |
| 88 "uuid": "c7b6d000-a300-4dcf-9f8a-bcfd1052a585" | |
| 89 } | |
| 90 ] | |
| 91 } | |
| 92 }, | |
| 93 "uuid": "dd00f51a-b81d-433f-b178-7a02200a0ae4" | |
| 94 } |
