Mercurial > repos > stemcellcommons > merging_workflows
diff Merge_FASTQ.ga @ 0:5703e64e15e9 draft default tip
Initial upload
author | stemcellcommons |
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date | Tue, 05 Dec 2017 14:58:39 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Merge_FASTQ.ga Tue Dec 05 14:58:39 2017 -0500 @@ -0,0 +1,94 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "{\n \"description\": \"Merges a list of FASTQ files into a single FASTQ.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"File to be merged\"\n }\n ]\n }\n}", + "format-version": "0.1", + "name": "Merge FASTQ", + "steps": { + "0": { + "annotation": "", + "content_id": null, + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Input Dataset Collection" + } + ], + "label": null, + "name": "Input dataset collection", + "outputs": [], + "position": { + "left": 161.5, + "top": 215.5 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}", + "tool_version": null, + "type": "data_collection_input", + "uuid": "38f167a0-9b63-4c15-92b8-15ade85b580b", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "2d4184c2-900b-435f-9850-fdd368909b74" + } + ] + }, + "1": { + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", + "id": 1, + "input_connections": { + "input_list": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "label": null, + "name": "Collapse Collection", + "outputs": [ + { + "name": "output", + "type": "input" + } + ], + "position": { + "left": 488, + "top": 218 + }, + "post_job_actions": { + "ChangeDatatypeActionoutput": { + "action_arguments": { + "newtype": "fastq" + }, + "action_type": "ChangeDatatypeAction", + "output_name": "output" + }, + "RenameDatasetActionoutput": { + "action_arguments": { + "newname": "merged" + }, + "action_type": "RenameDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_list\": \"null\", \"one_header\": \"\\\"False\\\"\", \"filename\": \"{\\\"add_name\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}", + "tool_version": "4.0", + "type": "tool", + "uuid": "e0e26825-a370-4e76-ac2f-e7e90d028ff4", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "c7b6d000-a300-4dcf-9f8a-bcfd1052a585" + } + ] + } + }, + "uuid": "dd00f51a-b81d-433f-b178-7a02200a0ae4" +} \ No newline at end of file