annotate RNA-seq_(PE)_Quantification_-_Human.ga @ 2:324f32e70ea4 draft default tip

Update annotations
author stemcellcommons
date Wed, 25 Oct 2017 15:10:22 -0400
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\n\t\"description\": \"Transcript quantification for paired-end RNA-seq data. Reads are aligned to the human (hg19) reference genome.\",\n\t\"file_relationship\": {\n\t\t\"value_type\": \"LIST\",\n\t\t\"name\": \"List of Paired inputs\",\n\t\t\"file_relationship\": {\n\t\t\t\"file_relationship\": {},\n\t\t\t\"value_type\": \"PAIR\",\n\t\t\t\"name\": \"Paired FASTQ files\",\n\t\t\t\"input_files\": [{\n\t\t\t\t\t\"allowed_filetypes\": [{\n\t\t\t\t\t\t\"name\": \"FASTQ\"\n\t\t\t\t\t}],\n\t\t\t\t\t\"name\": \"Forward FASTQ\",\n\t\t\t\t\t\"description\": \"Forward FASTQ\"\n\t\t\t\t},\n\t\t\t\t{\n\t\t\t\t\t\"allowed_filetypes\": [{\n\t\t\t\t\t\t\"name\": \"FASTQ\"\n\t\t\t\t\t}],\n\t\t\t\t\t\"name\": \"Reverse FASTQ\",\n\t\t\t\t\t\"description\": \"Reverse FASTQ\"\n\t\t\t\t}\n\t\t\t]\n\t\t}\n\t}\n}",
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4 "format-version": "0.1",
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5 "name": "RNA-seq (PE) Quantification - Human",
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6 "steps": {
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310 {
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351 "action_type": "HideDatasetAction",
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353 }
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355 "tool_errors": null,
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356 "tool_id": "toolshed.g2.bx.psu.edu/repos/scottx611x/tophat2_with_gene_annotations/tophat2/2.1.0",
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379 "inputs": [],
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380 "label": null,
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381 "name": "featureCounts",
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382 "outputs": [
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383 {
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384 "name": "output",
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385 "type": "tabular"
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387 {
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388 "name": "output_summary",
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389 "type": "tabular"
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390 }
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398 "tool_id": "toolshed.g2.bx.psu.edu/repos/yhoogstrate/featurecounts/featurecounts/1.4.6.p5",
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403 "workflow_outputs": [
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stemcellcommons
parents:
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404 {
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stemcellcommons
parents:
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405 "label": null,
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stemcellcommons
parents:
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406 "output_name": "output_summary",
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stemcellcommons
parents:
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407 "uuid": "9162a69c-9023-4ab4-9931-2e147e02f1f4"
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stemcellcommons
parents:
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408 },
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stemcellcommons
parents:
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409 {
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stemcellcommons
parents:
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410 "label": null,
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stemcellcommons
parents:
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411 "output_name": "output",
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stemcellcommons
parents:
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412 "uuid": "772073ae-2b57-4dda-bf6e-c8725c01b106"
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stemcellcommons
parents:
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413 }
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stemcellcommons
parents:
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414 ]
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stemcellcommons
parents:
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415 }
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stemcellcommons
parents:
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416 },
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stemcellcommons
parents:
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417 "uuid": "a5618acc-41ea-45c2-9cf2-f8ebd7463d88"
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stemcellcommons
parents:
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418 }