Mercurial > repos > stemcellcommons > spp_tool
comparison spp_wrapper.xml @ 1:23b22c1692fa draft default tip
Replace simplejson with json.
author | hackdna |
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date | Tue, 20 May 2014 10:53:35 -0400 |
parents | b15734276ca3 |
children |
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0:b15734276ca3 | 1:23b22c1692fa |
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97 </data> | 97 </data> |
98 </outputs> | 98 </outputs> |
99 | 99 |
100 <configfiles> | 100 <configfiles> |
101 <configfile name="options_file"><% | 101 <configfile name="options_file"><% |
102 import simplejson | 102 import json |
103 %> | 103 %> |
104 #set $__options ={ 'experiment_name':str($experiment_name), 'chip_file':str($major_command.input_chipseq_file1) } | 104 #set $__options ={ 'experiment_name':str($experiment_name), 'chip_file':str($major_command.input_chipseq_file1) } |
105 | 105 |
106 #if str( $major_command.input_control_file1 ) != 'None': | 106 #if str( $major_command.input_control_file1 ) != 'None': |
107 #set $__options['input_file'] = str( $major_command.input_control_file1 ) | 107 #set $__options['input_file'] = str( $major_command.input_control_file1 ) |
163 #set $__options['savd'] = str( $major_command.save_rdata_file ) | 163 #set $__options['savd'] = str( $major_command.save_rdata_file ) |
164 #set $__options['savn'] = str( $major_command.save_narrowpeak_file ) | 164 #set $__options['savn'] = str( $major_command.save_narrowpeak_file ) |
165 #set $__options['savp'] = str( $major_command.save_plot_file ) | 165 #set $__options['savp'] = str( $major_command.save_plot_file ) |
166 #end if | 166 #end if |
167 | 167 |
168 ${ simplejson.dumps( __options ) } | 168 ${ json.dumps( __options ) } |
169 </configfile> | 169 </configfile> |
170 </configfiles> | 170 </configfiles> |
171 <tests> | 171 <tests> |
172 <!--none yet for spp--> | 172 <!--none yet for spp--> |
173 </tests> | 173 </tests> |