Mercurial > repos > stheil > package_idba
comparison tool_dependencies.xml @ 0:1fde0b7d7d40 draft default tip
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| author | stheil |
|---|---|
| date | Thu, 24 Sep 2015 11:57:36 -0400 |
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| children |
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| -1:000000000000 | 0:1fde0b7d7d40 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="idba" version="1.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="shell_command">git clone https://github.com/loneknightpy/idba.git idba</action> | |
| 7 <action type="change_directory">idba</action> | |
| 8 <action type="shell_command">./build.sh</action> | |
| 9 <action type="shell_command">./configure</action> | |
| 10 <action type="shell_command">make</action> | |
| 11 <action type="move_file"> | |
| 12 <source>bin/fa2fq</source> | |
| 13 <destination>$INSTALL_DIR/bin</destination> | |
| 14 </action> | |
| 15 <action type="move_file"> | |
| 16 <source>bin/filter_blat</source> | |
| 17 <destination>$INSTALL_DIR/bin</destination> | |
| 18 </action> | |
| 19 <action type="move_file"> | |
| 20 <source>bin/filter_contigs</source> | |
| 21 <destination>$INSTALL_DIR/bin</destination> | |
| 22 </action> | |
| 23 <action type="move_file"> | |
| 24 <source>bin/filterfa</source> | |
| 25 <destination>$INSTALL_DIR/bin</destination> | |
| 26 </action> | |
| 27 <action type="move_file"> | |
| 28 <source>bin/fq2fa</source> | |
| 29 <destination>$INSTALL_DIR/bin</destination> | |
| 30 </action> | |
| 31 <action type="move_file"> | |
| 32 <source>bin/idba</source> | |
| 33 <destination>$INSTALL_DIR/bin</destination> | |
| 34 </action> | |
| 35 <action type="move_file"> | |
| 36 <source>bin/idba_hybrid</source> | |
| 37 <destination>$INSTALL_DIR/bin</destination> | |
| 38 </action> | |
| 39 <action type="move_file"> | |
| 40 <source>bin/idba_tran</source> | |
| 41 <destination>$INSTALL_DIR/bin</destination> | |
| 42 </action> | |
| 43 <action type="move_file"> | |
| 44 <source>bin/idba_tran_test</source> | |
| 45 <destination>$INSTALL_DIR/bin</destination> | |
| 46 </action> | |
| 47 <action type="move_file"> | |
| 48 <source>bin/idba_ud</source> | |
| 49 <destination>$INSTALL_DIR/bin</destination> | |
| 50 </action> | |
| 51 <action type="move_file"> | |
| 52 <source>bin/parallel_blat</source> | |
| 53 <destination>$INSTALL_DIR/bin</destination> | |
| 54 </action> | |
| 55 <action type="move_file"> | |
| 56 <source>bin/parallel_rna_blat</source> | |
| 57 <destination>$INSTALL_DIR/bin</destination> | |
| 58 </action> | |
| 59 <action type="move_file"> | |
| 60 <source>bin/print_graph</source> | |
| 61 <destination>$INSTALL_DIR/bin</destination> | |
| 62 </action> | |
| 63 <action type="move_file"> | |
| 64 <source>bin/raw_n50</source> | |
| 65 <destination>$INSTALL_DIR/bin</destination> | |
| 66 </action> | |
| 67 <action type="move_file"> | |
| 68 <source>bin/sample_reads</source> | |
| 69 <destination>$INSTALL_DIR/bin</destination> | |
| 70 </action> | |
| 71 <action type="move_file"> | |
| 72 <source>bin/scaffold</source> | |
| 73 <destination>$INSTALL_DIR/bin</destination> | |
| 74 </action> | |
| 75 <action type="move_file"> | |
| 76 <source>bin/shuffle_reads</source> | |
| 77 <destination>$INSTALL_DIR/bin</destination> | |
| 78 </action> | |
| 79 <action type="move_file"> | |
| 80 <source>bin/sim_reads</source> | |
| 81 <destination>$INSTALL_DIR/bin</destination> | |
| 82 </action> | |
| 83 <action type="move_file"> | |
| 84 <source>bin/sim_reads_tran</source> | |
| 85 <destination>$INSTALL_DIR/bin</destination> | |
| 86 </action> | |
| 87 <action type="move_file"> | |
| 88 <source>bin/sort_psl</source> | |
| 89 <destination>$INSTALL_DIR/bin</destination> | |
| 90 </action> | |
| 91 <action type="move_file"> | |
| 92 <source>bin/sort_reads</source> | |
| 93 <destination>$INSTALL_DIR/bin</destination> | |
| 94 </action> | |
| 95 <action type="move_file"> | |
| 96 <source>bin/split_fa</source> | |
| 97 <destination>$INSTALL_DIR/bin</destination> | |
| 98 </action> | |
| 99 <action type="move_file"> | |
| 100 <source>bin/split_fq</source> | |
| 101 <destination>$INSTALL_DIR/bin</destination> | |
| 102 </action> | |
| 103 <action type="move_file"> | |
| 104 <source>bin/split_scaffold</source> | |
| 105 <destination>$INSTALL_DIR/bin</destination> | |
| 106 </action> | |
| 107 <action type="move_file"> | |
| 108 <source>bin/test</source> | |
| 109 <destination>$INSTALL_DIR/bin</destination> | |
| 110 </action> | |
| 111 <action type="move_file"> | |
| 112 <source>bin/validate_component</source> | |
| 113 <destination>$INSTALL_DIR/bin</destination> | |
| 114 </action> | |
| 115 <action type="move_file"> | |
| 116 <source>bin/validate_contigs_blat</source> | |
| 117 <destination>$INSTALL_DIR/bin</destination> | |
| 118 </action> | |
| 119 <action type="move_file"> | |
| 120 <source>bin/validate_contigs_mummer</source> | |
| 121 <destination>$INSTALL_DIR/bin</destination> | |
| 122 </action> | |
| 123 <action type="move_file"> | |
| 124 <source>bin/validate_reads_blat</source> | |
| 125 <destination>$INSTALL_DIR/bin</destination> | |
| 126 </action> | |
| 127 <action type="move_file"> | |
| 128 <source>bin/validate_rna</source> | |
| 129 <destination>$INSTALL_DIR/bin</destination> | |
| 130 </action> | |
| 131 <action type="set_environment"> | |
| 132 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 133 </action> | |
| 134 </actions> | |
| 135 </install> | |
| 136 </package> | |
| 137 </tool_dependency> |