diff ebcsgen_generate_ts.py @ 0:3bdec3b22152 draft default tip

planemo upload for repository https://github.com/sybila/galaxytools/tree/master/tools/ebcsgen commit 7befebc7a9bc40d8b97f4dac752ad9646aac40de

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ebcsgen_generate_ts.py	Fri Sep 09 13:06:32 2022 +0000
@@ -0,0 +1,43 @@
+import argparse
+
+from eBCSgen.Errors.ModelParsingError import ModelParsingError
+from eBCSgen.Errors.UnspecifiedParsingError import UnspecifiedParsingError
+from eBCSgen.Parsing.ParseBCSL import Parser
+
+import numpy as np
+
+
+args_parser = argparse.ArgumentParser(description='Transition system generating')
+
+args_parser._action_groups.pop()
+required = args_parser.add_argument_group('required arguments')
+optional = args_parser.add_argument_group('optional arguments')
+
+required.add_argument('--model', type=str, required=True)
+required.add_argument('--output', type=str, required=True)
+required.add_argument('--direct', required=True)
+
+optional.add_argument('--max_time', type=float, default=np.inf)
+optional.add_argument('--max_size', type=float, default=np.inf)
+optional.add_argument('--bound', type=int, default=None)
+
+args = args_parser.parse_args()
+
+model_parser = Parser("model")
+model_str = open(args.model, "r").read()
+
+model = model_parser.parse(model_str)
+if model.success:
+    if eval(args.direct):
+        ts = model.data.generate_direct_transition_system(args.max_time,
+                                                          args.max_size,
+                                                          args.bound)
+        ts.change_to_vector_backend()
+    else:
+        vm = model.data.to_vector_model(args.bound)
+        ts = vm.generate_transition_system(None, args.max_time, args.max_size)
+    ts.save_to_json(args.output, model.data.params)
+else:
+    if "error" in model.data:
+        raise UnspecifiedParsingError(model.data["error"])
+    raise ModelParsingError(model.data, model_str)