# HG changeset patch
# User takakoron
# Date 1459825807 14400
# Node ID 2495b1506d0602f2e14e17d87557a2bbd318c2c9
# Parent  fab40d775877369fb89c8afdbfbefa6d57536229
Deleted selected files

diff -r fab40d775877 -r 2495b1506d06 Visualize_Distrubution_of_polymorphism.loc
--- a/Visualize_Distrubution_of_polymorphism.loc	Mon Apr 04 23:03:21 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use a directory of BWA indexed sequences data files.  You will need
-#to create these data files and then create a bwa_index.loc file 
-#similar to this one (store it in this directory) that points to 
-#the directories in which those files are stored. The bwa_index.loc 
-#file has this format (white space characters are TAB characters):
-#
-#<build>	<file_base>
-#
-#So, for example, if you had phiX indexed stored in 
-#/depot/data2/galaxy/phiX/base/, 
-#then the bwa_index.loc entry would look like this:
-#
-#phiX	/depot/data2/galaxy/phiX/base/phiX.fa
-#
-#and your /depot/data2/galaxy/phiX/base/ directory
-#would contain phiX.fa.* files:
-#
-#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 phiX.fa.amb
-#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 phiX.fa.ann
-#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 phiX.fa.bwt
-#...etc...
-#
-#Your bwa_index.loc file should include an entry per line for each
-#index set you have stored.  The "file" in the path does not actually
-#exist, but it is the prefix for the actual index files.  For example:
-#
-#phiX	/depot/data2/galaxy/phiX/base/phiX.fa
-#hg18	/depot/data2/galaxy/hg18/base/hg18.fa
-Oryza sativa(IRGSPbuild5)	/disk/reference/ddbj/distribution_of_polymorphism/o_sativa.build5.fa
-Oryza sativa(IRGSPbuild1.0)	/disk/reference/ddbj/distribution_of_polymorphism/o_sativa.build1.0.fa
-Arabidopsis thaliana(TAIR10)	/disk/reference/ddbj/distribution_of_polymorphism/TAIR10.fa
-Zea mays B73(RefGen_v2)	/disk/reference/ddbj/distribution_of_polymorphism/ZmB73.RefGen2.fa
-Sorghum bicolor(phytozome_v9.0_Sbicolor_v1.4)	/disk/reference/ddbj/distribution_of_polymorphism/Sorbi.Sbi1.4.fa
-Sorghum bicolor(phytozome_v9.0_Sbicolor_v2.1)	/disk/reference/ddbj/distribution_of_polymorphism/Sorbi.Sbi12.1.fa
diff -r fab40d775877 -r 2495b1506d06 Visualize_distrubution_of_polymorphism_docker.xml
--- a/Visualize_distrubution_of_polymorphism_docker.xml	Mon Apr 04 23:03:21 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<tool id="Visualize_distrubution_of_polymorphism_docker" name="Visualize distribution of DNA polymorphism">
-	<requirements>
-	    <container type="docker">takakoron/distribution_of_dna_polymorphism</container>
-	</requirements>
-	<command interpreter="perl">
-
-		/usr/src/myapp/kick_distribution_polymorphism.pl
-		
-		'$annotation_data'
-		'$polymorphism'
-		'$output1'
-
-	</command>
-
-	<inputs>
-		<!--- input annotation data -->
-		<param name="annotation_data" type="select" label="Select an annotation data" help="If your annotation of interest is not listed, contact the P-GALAXY team">">
-			<options from_file="Visualize_Distrubution_of_polymorphism.loc">
-				<column name="value" index="1" />
-				<column name="name" index="0" />
-			</options>
-		</param>
-		<param name="polymorphism" type="data" label="Select DNA polymorphism file(format : samtools pileup or mpileup)" />
-	</inputs>
-
-	<outputs>
-		<data name="output1" format="html" />
-	</outputs>
-
-<!---
-   <help>
-
-.. class:: infomark
-**About data** 
-
-Distribution of chromosome is appeared in order of genome file.
-
-   </help>
--->
-
-</tool>
-
-