comparison dnabot.xml @ 1:de6812daba39 draft

"planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"

0:6d55c77a17ab

<tool id="dnabot" name="DNA-Bot" version="3.0.0">
    <description>DNA assembly using BASIC on OpenTrons</description>
    <requirements>
        <requirement type="package" version="3.0.0">dnabot</requirement>
     </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python -m dnabot.dnabot_app
        #if $adv.default_settings_file
            --default_settings_file '$adv.default_settings_file'
        #end if

* **output_dir**: (string) Output directory. Default: same directory than the one containing the "construct_path" file.

Version
-------

3.0.0

Authors
-------

* **Matthew C Haines**

* Marko Storch
* Geoff Baldwin
    ]]></help>
    <citations>
        <citation type="bibtex">
            @article{10.1093/synbio/ysaa010,
                author = {Storch, Marko and Haines, Matthew C and Baldwin, Geoff S},
                title = {DNA-BOT: a low-cost, automated DNA assembly platform for synthetic biology},
                journal = {Synthetic Biology},
                volume = {5},
                number = {1},
                year = {2020},
                month = {07},
                issn = {2397-7000},
                doi = {10.1093/synbio/ysaa010},
                url = {https://doi.org/10.1093/synbio/ysaa010},
                note = {ysaa010},
                eprint = {https://academic.oup.com/synbio/article-pdf/5/1/ysaa010/33722340/ysaa010.pdf},
            }
        </citation>
    </citations>
</tool>

1:de6812daba39

<tool id="dnabot" name="DNA-Bot" version="@TOOL_VERSION@" profile="19.09">
    <description>DNA assembly using BASIC on OpenTrons</description>
    <macros>
        <token name="@TOOL_VERSION@">3.1.0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">dnabot</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python -m dnabot.dnabot_app
        #if $adv.default_settings_file
            --default_settings_file '$adv.default_settings_file'
        #end if

* **output_dir**: (string) Output directory. Default: same directory than the one containing the "construct_path" file.

Version
-------

3.1.0

Authors
-------

* **Matthew C Haines**

* Marko Storch
* Geoff Baldwin
    ]]></help>
    <citations>
        <citation type="doi">10.1093/synbio/ysaa010</citation>
    </citations>
</tool>