Mercurial > repos > tduigou > doe_synbio_optdoe

comparison optdoe.xml @ 1:e56802e12fea draft

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planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
author tduigou
date Mon, 01 May 2023 01:29:41 +0000
parents cae2975d264f
children 645d10db2819
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0:cae2975d264f 1:e56802e12fea
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171 Where n is the number of experimental runs or library size, p is the number of independent variables, and X is the model matrix, i.e., a row for each experimental run and a column for each term in the model. The library size n can be selected and should be above a minimal threshold depending on the number of combinatorial complexity of the library. 171 Where n is the number of experimental runs or library size, p is the number of independent variables, and X is the model matrix, i.e., a row for each experimental run and a column for each term in the model. The library size n can be selected and should be above a minimal threshold depending on the number of combinatorial complexity of the library.
172 The experimental design can be evaluated through the provided diagnostics for D-efficiency, power analysis, and relative prediction variance, allowing the optimal selection of library size. 172 The experimental design can be evaluated through the provided diagnostics for D-efficiency, power analysis, and relative prediction variance, allowing the optimal selection of library size.
173 The resulting design is provided as an SBOL collection containing the definition of each DNA component and the combinatorial library of constructs. 173 The resulting design is provided as an SBOL collection containing the definition of each DNA component and the combinatorial library of constructs.
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175 .. image:: https://raw.githubusercontent.com/brsynth/synbiocad-galaxy-wrappers/master/optdoe/img/image3.png 175 .. image:: https://raw.githubusercontent.com/brsynth/synbiocad-galaxy-wrappers/master/tools/doe_synbio/img/image3.png
176 :width: 80 % 176 :width: 80 %
177 :align: center 177 :align: center
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180 .. image:: https://raw.githubusercontent.com/brsynth/synbiocad-galaxy-wrappers/master/optdoe/img/image46.png 180 .. image:: https://raw.githubusercontent.com/brsynth/synbiocad-galaxy-wrappers/master/tools/doe_synbio/img/image46.png
181 :width: 80 % 181 :width: 80 %
182 :align: center 182 :align: center
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