Mercurial > repos > tduigou > doe_synbio_optdoe
changeset 4:e0d146e3010d draft default tip
planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 20770dfcb79499aa201b8b6faed420babef8d053
| author | tduigou |
|---|---|
| date | Tue, 23 Jul 2024 09:30:52 +0000 |
| parents | 645d10db2819 |
| children | |
| files | test-data/sampler/input/components.tsv test-data/sampler/input/parameters.tsv test-data/sampler/output/sampling.test-1.tsv test-data/sampler/output/sampling.test-2.tsv |
| diffstat | 4 files changed, 14 insertions(+), 210 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sampler/input/components.tsv Tue Jul 23 09:30:52 2024 +0000 @@ -0,0 +1,5 @@ +Component maxValue +Hela lysate 1000 +Access prot 50% 400 +Reaction mix 400 +RNA 1ug/uL 200
--- a/test-data/sampler/input/parameters.tsv Wed Feb 14 15:24:27 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -Component maxValue Ratios -Component_1 125 0.0 0.1 0.3 0.5 1.0 -Component_2 125 1 -Component_3 125 -Component_4 125 -Component_5 125 -Component_6 125 -Component_7 125 -Component_8 125
--- a/test-data/sampler/output/sampling.test-1.tsv Wed Feb 14 15:24:27 2024 +0000 +++ b/test-data/sampler/output/sampling.test-1.tsv Tue Jul 23 09:30:52 2024 +0000 @@ -1,100 +1,4 @@ -Component_1 Component_2 Component_3 Component_4 Component_5 Component_6 Component_7 Component_8 -0.0 125.0 125.0 0.0 31.25 93.75 62.5 93.75 -37.5 125.0 31.25 93.75 125.0 62.5 125.0 125.0 -37.5 125.0 0.0 93.75 31.25 31.25 31.25 0.0 -37.5 125.0 31.25 62.5 125.0 125.0 93.75 93.75 -12.5 125.0 31.25 31.25 93.75 125.0 31.25 31.25 -125.0 125.0 31.25 93.75 125.0 0.0 125.0 93.75 -0.0 125.0 93.75 0.0 93.75 125.0 31.25 125.0 -125.0 125.0 125.0 31.25 0.0 0.0 125.0 31.25 -37.5 125.0 125.0 125.0 125.0 93.75 62.5 0.0 -125.0 125.0 62.5 62.5 62.5 62.5 0.0 0.0 -62.5 125.0 93.75 0.0 93.75 62.5 62.5 62.5 -37.5 125.0 93.75 62.5 93.75 0.0 93.75 0.0 -125.0 125.0 62.5 62.5 93.75 93.75 93.75 125.0 -37.5 125.0 0.0 93.75 125.0 125.0 62.5 0.0 -0.0 125.0 31.25 0.0 0.0 0.0 93.75 0.0 -37.5 125.0 62.5 31.25 0.0 93.75 93.75 62.5 -12.5 125.0 31.25 62.5 125.0 125.0 125.0 62.5 -12.5 125.0 62.5 62.5 31.25 125.0 125.0 125.0 -125.0 125.0 0.0 125.0 31.25 62.5 93.75 31.25 -12.5 125.0 31.25 0.0 62.5 93.75 125.0 93.75 -62.5 125.0 0.0 125.0 0.0 31.25 125.0 31.25 -12.5 125.0 0.0 93.75 62.5 93.75 0.0 93.75 -0.0 125.0 62.5 125.0 62.5 125.0 0.0 125.0 -62.5 125.0 31.25 125.0 62.5 31.25 0.0 93.75 -37.5 125.0 0.0 62.5 0.0 62.5 62.5 31.25 -62.5 125.0 0.0 0.0 93.75 31.25 62.5 0.0 -12.5 125.0 0.0 93.75 0.0 62.5 31.25 31.25 -0.0 125.0 62.5 0.0 31.25 62.5 31.25 31.25 -125.0 125.0 0.0 125.0 125.0 31.25 62.5 62.5 -0.0 125.0 31.25 31.25 125.0 31.25 125.0 31.25 -12.5 125.0 31.25 0.0 125.0 0.0 62.5 93.75 -125.0 125.0 62.5 31.25 62.5 93.75 0.0 62.5 -37.5 125.0 125.0 62.5 0.0 0.0 125.0 0.0 -125.0 125.0 93.75 31.25 93.75 125.0 0.0 0.0 -0.0 125.0 62.5 31.25 0.0 62.5 93.75 62.5 -37.5 125.0 125.0 93.75 93.75 62.5 62.5 93.75 -12.5 125.0 31.25 62.5 0.0 0.0 0.0 93.75 -125.0 125.0 31.25 125.0 93.75 0.0 31.25 0.0 -62.5 125.0 93.75 0.0 62.5 125.0 31.25 125.0 -12.5 125.0 0.0 62.5 31.25 31.25 31.25 93.75 -62.5 125.0 93.75 31.25 125.0 125.0 62.5 125.0 -0.0 125.0 62.5 93.75 125.0 93.75 62.5 31.25 -37.5 125.0 93.75 93.75 62.5 31.25 0.0 0.0 -37.5 125.0 93.75 125.0 0.0 0.0 93.75 0.0 -0.0 125.0 62.5 0.0 31.25 93.75 93.75 0.0 -125.0 125.0 125.0 31.25 31.25 125.0 31.25 93.75 -62.5 125.0 125.0 93.75 31.25 31.25 0.0 125.0 -0.0 125.0 62.5 125.0 93.75 93.75 0.0 31.25 -37.5 125.0 31.25 31.25 0.0 62.5 62.5 0.0 -12.5 125.0 0.0 0.0 31.25 93.75 62.5 125.0 -62.5 125.0 0.0 125.0 125.0 93.75 93.75 0.0 -0.0 125.0 93.75 93.75 31.25 125.0 0.0 62.5 -125.0 125.0 0.0 0.0 93.75 31.25 31.25 62.5 -37.5 125.0 125.0 31.25 93.75 0.0 93.75 93.75 -62.5 125.0 31.25 0.0 93.75 31.25 125.0 0.0 -0.0 125.0 62.5 62.5 62.5 31.25 31.25 93.75 -37.5 125.0 125.0 62.5 62.5 0.0 93.75 62.5 -62.5 125.0 62.5 125.0 62.5 125.0 31.25 62.5 -125.0 125.0 0.0 31.25 125.0 93.75 93.75 31.25 -37.5 125.0 62.5 125.0 62.5 62.5 31.25 62.5 -12.5 125.0 0.0 31.25 0.0 62.5 62.5 125.0 -12.5 125.0 93.75 93.75 31.25 125.0 125.0 125.0 -12.5 125.0 93.75 93.75 31.25 31.25 31.25 93.75 -62.5 125.0 0.0 31.25 31.25 31.25 125.0 62.5 -37.5 125.0 31.25 93.75 125.0 62.5 0.0 62.5 -0.0 125.0 125.0 125.0 0.0 62.5 125.0 125.0 -62.5 125.0 31.25 125.0 0.0 31.25 93.75 31.25 -125.0 125.0 93.75 125.0 125.0 125.0 31.25 62.5 -12.5 125.0 62.5 31.25 62.5 93.75 125.0 31.25 -12.5 125.0 0.0 125.0 93.75 0.0 31.25 31.25 -12.5 125.0 93.75 125.0 125.0 62.5 93.75 31.25 -0.0 125.0 93.75 93.75 62.5 31.25 0.0 125.0 -62.5 125.0 125.0 0.0 93.75 0.0 125.0 93.75 -0.0 125.0 0.0 0.0 31.25 62.5 0.0 62.5 -62.5 125.0 62.5 31.25 31.25 62.5 31.25 125.0 -62.5 125.0 125.0 93.75 31.25 0.0 0.0 93.75 -125.0 125.0 62.5 0.0 125.0 125.0 93.75 62.5 -125.0 125.0 31.25 125.0 0.0 31.25 93.75 62.5 -0.0 125.0 125.0 62.5 93.75 0.0 0.0 31.25 -125.0 125.0 125.0 31.25 62.5 0.0 0.0 62.5 -0.0 125.0 0.0 31.25 93.75 31.25 62.5 31.25 -125.0 125.0 93.75 93.75 93.75 93.75 62.5 125.0 -0.0 125.0 125.0 31.25 62.5 0.0 62.5 125.0 -12.5 125.0 93.75 62.5 0.0 125.0 93.75 93.75 -12.5 125.0 125.0 0.0 125.0 62.5 0.0 62.5 -37.5 125.0 31.25 93.75 0.0 125.0 0.0 125.0 -0.0 125.0 93.75 0.0 62.5 125.0 31.25 125.0 -62.5 125.0 125.0 93.75 125.0 31.25 125.0 0.0 -125.0 125.0 93.75 62.5 62.5 0.0 125.0 125.0 -62.5 125.0 93.75 62.5 31.25 93.75 31.25 125.0 -37.5 125.0 31.25 0.0 93.75 93.75 125.0 93.75 -0.0 125.0 0.0 125.0 31.25 93.75 125.0 31.25 -62.5 125.0 125.0 31.25 62.5 62.5 62.5 0.0 -62.5 125.0 62.5 93.75 93.75 31.25 93.75 0.0 -62.5 125.0 93.75 62.5 31.25 0.0 125.0 93.75 -12.5 125.0 31.25 0.0 0.0 0.0 93.75 93.75 -12.5 125.0 125.0 62.5 125.0 93.75 62.5 31.25 -125.0 125.0 125.0 125.0 0.0 93.75 31.25 31.25 -125.0 125.0 62.5 62.5 0.0 125.0 0.0 0.0 +Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL +492.5,25.0,310.0,152.5 +970.0,165.0,257.5,112.5 +537.5,325.0,192.5,185.0
--- a/test-data/sampler/output/sampling.test-2.tsv Wed Feb 14 15:24:27 2024 +0000 +++ b/test-data/sampler/output/sampling.test-2.tsv Tue Jul 23 09:30:52 2024 +0000 @@ -1,101 +1,5 @@ -Component_1 Component_2 Component_3 Component_4 Component_5 Component_6 Component_7 Component_8 -62.5 125.0 25.0 50.0 50.0 25.0 25.0 37.5 -0.0 125.0 25.0 37.5 25.0 50.0 37.5 25.0 -125.0 125.0 25.0 25.0 37.5 25.0 50.0 50.0 -12.5 125.0 25.0 25.0 50.0 37.5 37.5 25.0 -37.5 125.0 25.0 25.0 37.5 37.5 50.0 37.5 -62.5 125.0 25.0 37.5 25.0 25.0 37.5 25.0 -37.5 125.0 50.0 25.0 50.0 50.0 37.5 25.0 -62.5 125.0 37.5 50.0 37.5 50.0 37.5 37.5 -125.0 125.0 37.5 50.0 25.0 50.0 25.0 50.0 -37.5 125.0 50.0 37.5 50.0 50.0 25.0 37.5 -62.5 125.0 50.0 37.5 25.0 25.0 25.0 25.0 -12.5 125.0 25.0 37.5 37.5 37.5 37.5 37.5 -0.0 125.0 25.0 50.0 37.5 37.5 37.5 37.5 -0.0 125.0 37.5 25.0 50.0 50.0 50.0 37.5 -62.5 125.0 50.0 25.0 37.5 50.0 50.0 25.0 -37.5 125.0 25.0 50.0 37.5 50.0 37.5 25.0 -125.0 125.0 37.5 50.0 50.0 50.0 25.0 25.0 -62.5 125.0 37.5 50.0 37.5 37.5 25.0 37.5 -12.5 125.0 25.0 50.0 25.0 50.0 50.0 25.0 -125.0 125.0 25.0 37.5 50.0 50.0 25.0 50.0 -62.5 125.0 25.0 25.0 37.5 25.0 37.5 50.0 -62.5 125.0 50.0 25.0 37.5 25.0 50.0 50.0 -12.5 125.0 25.0 50.0 37.5 25.0 25.0 50.0 -12.5 125.0 37.5 25.0 25.0 50.0 50.0 25.0 -125.0 125.0 25.0 25.0 37.5 25.0 37.5 37.5 -0.0 125.0 50.0 37.5 37.5 37.5 25.0 37.5 -62.5 125.0 50.0 37.5 37.5 50.0 25.0 37.5 -125.0 125.0 50.0 25.0 50.0 37.5 50.0 50.0 -125.0 125.0 37.5 25.0 25.0 25.0 37.5 25.0 -12.5 125.0 50.0 50.0 50.0 25.0 37.5 50.0 -125.0 125.0 25.0 37.5 25.0 25.0 50.0 50.0 -62.5 125.0 37.5 37.5 25.0 50.0 37.5 37.5 -62.5 125.0 50.0 50.0 37.5 37.5 25.0 25.0 -0.0 125.0 37.5 37.5 25.0 25.0 50.0 50.0 -0.0 125.0 50.0 37.5 37.5 37.5 37.5 50.0 -37.5 125.0 25.0 37.5 50.0 37.5 37.5 37.5 -37.5 125.0 25.0 25.0 37.5 50.0 50.0 50.0 -62.5 125.0 37.5 37.5 50.0 50.0 50.0 37.5 -125.0 125.0 37.5 25.0 50.0 37.5 50.0 50.0 -37.5 125.0 50.0 50.0 50.0 37.5 25.0 25.0 -12.5 125.0 37.5 50.0 25.0 37.5 50.0 25.0 -0.0 125.0 25.0 50.0 25.0 25.0 37.5 50.0 -62.5 125.0 50.0 50.0 50.0 37.5 50.0 37.5 -12.5 125.0 25.0 37.5 50.0 50.0 25.0 37.5 -12.5 125.0 50.0 25.0 37.5 25.0 37.5 50.0 -37.5 125.0 25.0 25.0 37.5 50.0 37.5 50.0 -0.0 125.0 25.0 37.5 25.0 37.5 25.0 25.0 -62.5 125.0 50.0 25.0 37.5 37.5 25.0 25.0 -12.5 125.0 50.0 50.0 50.0 37.5 37.5 25.0 -37.5 125.0 37.5 37.5 37.5 37.5 25.0 37.5 -37.5 125.0 50.0 25.0 37.5 25.0 25.0 25.0 -37.5 125.0 37.5 37.5 25.0 50.0 25.0 37.5 -62.5 125.0 25.0 37.5 37.5 37.5 50.0 25.0 -125.0 125.0 25.0 25.0 25.0 25.0 50.0 37.5 -37.5 125.0 37.5 50.0 50.0 25.0 50.0 25.0 -125.0 125.0 37.5 25.0 25.0 37.5 50.0 25.0 -37.5 125.0 50.0 50.0 37.5 50.0 37.5 37.5 -12.5 125.0 25.0 25.0 37.5 25.0 37.5 25.0 -37.5 125.0 37.5 50.0 37.5 37.5 25.0 50.0 -125.0 125.0 37.5 25.0 50.0 25.0 37.5 50.0 -0.0 125.0 25.0 25.0 50.0 25.0 25.0 37.5 -125.0 125.0 50.0 50.0 50.0 37.5 37.5 50.0 -37.5 125.0 25.0 37.5 37.5 25.0 50.0 50.0 -12.5 125.0 50.0 25.0 37.5 37.5 37.5 50.0 -0.0 125.0 50.0 50.0 50.0 25.0 50.0 25.0 -125.0 125.0 37.5 37.5 50.0 50.0 25.0 50.0 -0.0 125.0 37.5 50.0 25.0 25.0 50.0 37.5 -0.0 125.0 25.0 50.0 25.0 25.0 25.0 50.0 -62.5 125.0 37.5 25.0 50.0 37.5 50.0 37.5 -0.0 125.0 50.0 25.0 25.0 25.0 50.0 50.0 -37.5 125.0 50.0 50.0 25.0 50.0 50.0 50.0 -12.5 125.0 37.5 50.0 25.0 50.0 25.0 37.5 -12.5 125.0 50.0 37.5 37.5 37.5 50.0 37.5 -37.5 125.0 50.0 37.5 50.0 37.5 37.5 50.0 -0.0 125.0 50.0 50.0 50.0 50.0 37.5 25.0 -37.5 125.0 50.0 25.0 50.0 25.0 25.0 25.0 -37.5 125.0 50.0 37.5 50.0 37.5 37.5 25.0 -12.5 125.0 25.0 25.0 50.0 37.5 25.0 50.0 -12.5 125.0 25.0 25.0 25.0 50.0 50.0 25.0 -12.5 125.0 50.0 25.0 37.5 25.0 50.0 25.0 -0.0 125.0 37.5 50.0 25.0 37.5 37.5 37.5 -62.5 125.0 37.5 37.5 50.0 25.0 25.0 37.5 -0.0 125.0 37.5 37.5 25.0 50.0 37.5 37.5 -125.0 125.0 25.0 25.0 37.5 50.0 25.0 25.0 -62.5 125.0 50.0 50.0 50.0 37.5 25.0 50.0 -62.5 125.0 25.0 37.5 25.0 25.0 25.0 37.5 -12.5 125.0 50.0 25.0 25.0 50.0 50.0 25.0 -62.5 125.0 25.0 37.5 37.5 25.0 50.0 25.0 -0.0 125.0 37.5 50.0 25.0 25.0 25.0 50.0 -125.0 125.0 50.0 37.5 25.0 25.0 37.5 25.0 -0.0 125.0 37.5 37.5 25.0 50.0 50.0 37.5 -125.0 125.0 37.5 37.5 25.0 37.5 50.0 50.0 -0.0 125.0 50.0 50.0 50.0 25.0 50.0 50.0 -12.5 125.0 37.5 25.0 50.0 50.0 25.0 25.0 -125.0 125.0 25.0 37.5 37.5 37.5 37.5 37.5 -12.5 125.0 37.5 50.0 50.0 50.0 25.0 37.5 -37.5 125.0 37.5 37.5 25.0 37.5 25.0 50.0 -0.0 125.0 25.0 50.0 25.0 50.0 37.5 37.5 -125.0 125.0 25.0 50.0 25.0 25.0 37.5 50.0 -0.0 125.0 50.0 50.0 37.5 25.0 37.5 37.5 +Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL +610.7,403.0,378.2,52.7 +666.5,384.40000000000003,282.1,111.60000000000001 +62.0,319.3,170.5,52.7 +409.2,238.70000000000002,399.90000000000003,37.2