comparison sampler.xml @ 4:d69cb64336e7 draft

planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 537d7fefe58984b8f7ca66010153a2fdc35ddf4b

3:0111a6eb7b98

<tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="@LICENCE@">
    <description>Generate data points using latin hypercube sampling (LHS)</description>
    <macros>
        <import>macros.xml</import>
        <token name="@TOOL_VERSION@">2.1.1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">icfree</requirement>
    </requirements>
    <expand macro="stdio"/>

        <data name="output_sampling" format="tabular" label="${tool.name}" />
    </outputs>
    <tests>
        <!-- test 1: check if identical outputs are produced with default parameters  -->
        <test>
            <param name="cfps_file" value="converter_proCFPS_parameters.tsv" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler_sampling.test-1.tsv" ftype="tabular" compare="diff" />
        </test>
        <!-- test 2: advanced arguments -->
        <test>
            <param name="cfps_file" value="converter_proCFPS_parameters.tsv" />
            <param name="nb_sampling_steps" value="3" />
            <param name="nb_samples" value="100" />
            <param name="sampling_ratio" value="0.4 0.2 0.3" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <param name="nb_samples" value="100" />
            <output name="output_sampling" file="sampler_sampling.test-2.tsv" ftype="tabular" compare="diff" />
        </test>
    </tests>
    <help><![CDATA[
Sampler
=======

4:d69cb64336e7

<tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="@LICENCE@">
    <description>Generate data points using latin hypercube sampling (LHS)</description>
    <macros>
        <import>macros.xml</import>
        <token name="@TOOL_VERSION@">2.2.0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">icfree</requirement>
    </requirements>
    <expand macro="stdio"/>

        <data name="output_sampling" format="tabular" label="${tool.name}" />
    </outputs>
    <tests>
        <!-- test 1: check if identical outputs are produced with default parameters  -->
        <test>
            <param name="cfps_file" value="sampler/input/parameters.tsv" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-1.tsv" ftype="tabular" compare="diff" />
        </test>
        <!-- test 2: advanced arguments -->
        <test>
            <param name="cfps_file" value="sampler/input/parameters.tsv" />
            <param name="nb_sampling_steps" value="3" />
            <param name="nb_samples" value="100" />
            <param name="sampling_ratio" value="0.4 0.2 0.3" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-2.tsv" ftype="tabular" compare="diff" />
        </test>
    </tests>
    <help><![CDATA[
Sampler
=======