comparison sampler.xml @ 14:1833b1b04278 draft default tip

planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 91b7c075c2c087bb431397326521fdfb9c61f894

13:9cc1c04278e9

<tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="MIT">
    <description>Generate Latin Hypercube Samples for given components.</description>
    <macros>
        <import>macros.xml</import>
        <token name="@TOOL_VERSION@">2.7.1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">icfree</requirement>
    </requirements>
    <expand macro="stdio"/>

                </when>
            </conditional>
        </section>
    </inputs>
    <outputs>
        <data name="output_sampling" format="tabular" label="${tool.name}" />
    </outputs>
    <tests>
        <!-- test 1: check if identical outputs are produced with default parameters  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="3" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-1.tsv" ftype="tabular" compare="diff" />
        </test>
        <!-- test 2: with specific step  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="4" />
            <param name="range_param" value="step" />
            <param name="by_step" value="3.1" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-2.tsv" ftype="tabular" compare="diff" />
        </test>
        <!-- test 3: with fixed values  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="3" />

            </repeat>
            <repeat name="rep">
                <param name="component_name" value="RNA 1ug/uL" />
                <param name="component_value" value="20" />
            </repeat>
            <output name="output_sampling" file="sampler/output/sampling.test-3.tsv" ftype="tabular" compare="diff" />
        </test>
        <!-- test 4: with ratios  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="4" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <param name="range_param" value="ratios" />
            <param name="by_ratios" value="0.5,0.1,0.3,0.2" />
            <output name="output_sampling" file="sampler/output/sampling.test-4.tsv" ftype="tabular" compare="diff" />
        </test>
    </tests>
    <help><![CDATA[
Sampler
=======

14:1833b1b04278

<tool id="doe_synbio_sampler" name="iCFree sampler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="MIT">
    <description>Generate Latin Hypercube Samples for given components.</description>
    <macros>
        <import>macros.xml</import>
        <token name="@TOOL_VERSION@">2.9.0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">icfree</requirement>
    </requirements>
    <expand macro="stdio"/>

                </when>
            </conditional>
        </section>
    </inputs>
    <outputs>
        <data name="output_sampling" format="csv" label="${tool.name}" />
    </outputs>
    <tests>
        <!-- test 1: check if identical outputs are produced with default parameters  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="3" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-1.csv" ftype="csv" compare="diff" />
        </test>
        <!-- test 2: with specific step  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="4" />
            <param name="range_param" value="step" />
            <param name="by_step" value="3.1" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <output name="output_sampling" file="sampler/output/sampling.test-2.csv" ftype="csv" compare="diff" />
        </test>
        <!-- test 3: with fixed values  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="3" />

            </repeat>
            <repeat name="rep">
                <param name="component_name" value="RNA 1ug/uL" />
                <param name="component_value" value="20" />
            </repeat>
            <output name="output_sampling" file="sampler/output/sampling.test-3.csv" ftype="csv" compare="diff" />
        </test>
        <!-- test 4: with ratios  -->
        <test>
            <param name="input_file" value="sampler/input/components.tsv" />
            <param name="num_samples" value="4" />
            <param name="seed_param" value="not_random" />
            <param name="seed" value="0" />
            <param name="range_param" value="ratios" />
            <param name="by_ratios" value="0.5,0.1,0.3,0.2" />
            <output name="output_sampling" file="sampler/output/sampling.test-4.csv" ftype="csv" compare="diff" />
        </test>
    </tests>
    <help><![CDATA[
Sampler
=======