Mercurial > repos > tduigou > doe_synbio_sampler
changeset 2:cd6d2c983e69 draft
planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit b29963ef22900ba666d9be11f1dc09e4e3febf8b
| author | tduigou |
|---|---|
| date | Sat, 01 Jul 2023 01:31:52 +0000 |
| parents | 81b079d1642c |
| children | 0111a6eb7b98 |
| files | sampler.xml |
| diffstat | 1 files changed, 21 insertions(+), 1 deletions(-) [+] |
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--- a/sampler.xml Tue May 30 21:02:03 2023 +0000 +++ b/sampler.xml Sat Jul 01 01:31:52 2023 +0000 @@ -87,7 +87,27 @@ Input ----- -* **CFPS Parameters File**: The first column is the parameter (or factor) names. The second column is the maxValue of the parameter that will be used in the sampling. The third column is the concnetration of the stock. The fourth column is the deadVolume of the parameter. This is used to calculate the volume of the parameter that will not be pipetted by the robot (because of viscosity). The fifth column is the specific ratios we want to have for this parameter. If nothing defined, then take ratios given in program options. If one single number is given, then take this number as a const value. + +Below is an example of an input file: + +| Parameter | maxValue | Ratios | +|-----------|----------|---------------------| +| CP | 125 | 0.0 0.1 0.3 0.5 1.0 | +| CPK | 125 | 1 | +| tRNA | 125 | | +| AA | 125 | | +| ribosomes | 125 | | +| mRNA | 125 | | +| Mg | 125 | | +| K | 125 | | + +The first column is the parameter (or factor) names. + +The second column is the maxValue of the parameter that will be used in the sampling. + +The third column is the specific ratios we want to have for this parameter. If nothing defined, then take ratios given in program options. +If one single number is given, then take this number as a const value. +If no value is given, then take the default ratios (`nb_samples` linear ratios from 0 to 1). Advanced options: -----------------