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comparison get_sbml_model.xml @ 4:1482291aaa5c draft

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planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 4a0b08beb8cdf51ab295a1f5f8c586d6bbaf5586
author tduigou
date Mon, 22 May 2023 14:57:40 +0000
parents f59e65c1606a
children 80c32f0cb716
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3:f59e65c1606a 4:1482291aaa5c
2 <description>Get an SBML model (BiGG)</description> 2 <description>Get an SBML model (BiGG)</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="7.81.0">curl</requirement> 4 <requirement type="package" version="7.81.0">curl</requirement>
5 <requirement type="package" version="1.11">gzip</requirement> 5 <requirement type="package" version="1.11">gzip</requirement>
6 <requirement type="package" version="5.19.2">python-libsbml</requirement> 6 <requirement type="package" version="5.19.2">python-libsbml</requirement>
7 <requirement type="package" version="5.19.2">requests</requirement> 7 <requirement type="package" version="2.29">requests</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 curl -o - 'http://bigg.ucsd.edu/static/models/$(input).xml.gz' 10 curl -o - 'http://bigg.ucsd.edu/static/models/$(input).xml.gz'
11 | gunzip > '$model'; 11 | gunzip > '$model';
12 python '$__tool_directory__/'get_infos.py '$model' --hostid '$input' --comp '$compartments' --biomass '$biomass' --taxid '$taxid' 12 python '$__tool_directory__/'get_infos.py
13 '$model'
14 --hostid '$input'
15 --comp '$compartments'
16 --biomass '$biomass'
17 --taxid '$taxid'
13 ]]></command> 18 ]]></command>
14 <inputs> 19 <inputs>
15 <param name="input" type="select" label="Strain"> 20 <param name="input" type="select" label="Strain">
16 <option value="iCN718">Acinetobacter baumannii AYE (iCN718)</option> 21 <option value="iCN718">Acinetobacter baumannii AYE (iCN718)</option>
17 <option value="iYO844">Bacillus subtilis subsp. subtilis str. 168 (iYO844)</option> 22 <option value="iYO844">Bacillus subtilis subsp. subtilis str. 168 (iYO844)</option>