Mercurial > repos > tduigou > icfree_calibrator
comparison calibrator.xml @ 2:ac296a9146df draft
planemo upload for repository https://github.com/brsynth/icfree-ml commit 9ac6ff08b3b98534f42ecfcecefa438ead21168c
| author | tduigou |
|---|---|
| date | Tue, 17 Dec 2024 13:40:42 +0000 |
| parents | 64294f757d70 |
| children | c5cd3420fed6 |
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| 1:64294f757d70 | 2:ac296a9146df |
|---|---|
| 62 <param name="ref_file" value="calibrator.input.ref.csv" /> | 62 <param name="ref_file" value="calibrator.input.ref.csv" /> |
| 63 <param name="jove_plus" value="3" /> | 63 <param name="jove_plus" value="3" /> |
| 64 <param name="jove_minus" value="2" /> | 64 <param name="jove_minus" value="2" /> |
| 65 <output name="output_calibrated" ftype="csv"> | 65 <output name="output_calibrated" ftype="csv"> |
| 66 <assert_contents> | 66 <assert_contents> |
| 67 <has_n_lines n="343" /> | 67 <has_n_lines n="58" /> |
| 68 </assert_contents> | 68 </assert_contents> |
| 69 </output> | 69 </output> |
| 70 <output name="calibrator_graph" ftype="png" > | 70 <output name="output_graph" ftype="png" > |
| 71 <assert_contents> | 71 <assert_contents> |
| 72 <has_size value="62000" delta="2000" /> | 72 <has_size value="45000" delta="2000" /> |
| 73 </assert_contents> | 73 </assert_contents> |
| 74 </output> | 74 </output> |
| 75 </test> | 75 </test> |
| 76 <test expect_num_outputs="2"> | 76 <test expect_num_outputs="2"> |
| 77 <!-- python -m icfree.learner.extractor -initial_data_file calibrator.input.initial_data.csv -sampling_file calibrator.input.sampling.tsv -output_file calibrator.output.extractor.2.csv -num_samples 20 -num_replicates 3 --> | 77 <!-- python -m icfree.learner.extractor -initial_data_file calibrator.input.initial_data.csv -sampling_file calibrator.input.sampling.tsv -output_file calibrator.output.extractor.2.csv -num_samples 20 -num_replicates 3 --> |
| 88 <output name="output_calibrated" ftype="csv"> | 88 <output name="output_calibrated" ftype="csv"> |
| 89 <assert_contents> | 89 <assert_contents> |
| 90 <has_n_lines n="21" /> | 90 <has_n_lines n="21" /> |
| 91 </assert_contents> | 91 </assert_contents> |
| 92 </output> | 92 </output> |
| 93 <output name="calibrator_graph" ftype="png" > | 93 <output name="output_graph" ftype="png" > |
| 94 <assert_contents> | 94 <assert_contents> |
| 95 <has_size value="45000" delta="1000" /> | 95 <has_size value="38000" delta="1000" /> |
| 96 </assert_contents> | 96 </assert_contents> |
| 97 </output> | 97 </output> |
| 98 | 98 |
| 99 </test> | 99 </test> |
| 100 | 100 |