Mercurial > repos > tduigou > icfree_calibrator
changeset 3:c5cd3420fed6 draft default tip
planemo upload for repository https://github.com/brsynth/icfree-ml commit 8dde46bddbe8df819c48e7e392893c34b22aa6dd
| author | tduigou |
|---|---|
| date | Fri, 20 Dec 2024 09:32:09 +0000 |
| parents | ac296a9146df |
| children | |
| files | calibrator.xml macros.xml |
| diffstat | 2 files changed, 16 insertions(+), 6 deletions(-) [+] |
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--- a/calibrator.xml Tue Dec 17 13:40:42 2024 +0000 +++ b/calibrator.xml Fri Dec 20 09:32:09 2024 +0000 @@ -32,7 +32,8 @@ --num '$adv.num_samples' #end if 'extractor.csv' 'reference.csv' && - mv 'calibrated.csv' '$output_calibrated' + mv 'calibrated.csv' '$output_calibrated' && + mv 'calibrated_control_points.csv' '$output_control_points' ]]></command> <inputs> <param name="initial_data_file" type="data" format="csv" label="Initial file" help="Initial file"/> @@ -51,10 +52,11 @@ </inputs> <outputs> <data name="output_calibrated" format="csv" label="${tool.name} - Calibrated yields" /> + <data name="output_control_points" format="csv" label="${tool.name} - Control points" /> <data name="output_graph" format="png" label="${tool.name} - Graph" /> </outputs> <tests> - <test expect_num_outputs="2"> + <test expect_num_outputs="3"> <!-- python -m icfree.learner.extractor -initial_data_file calibrator.input.initial_data.csv -sampling_file calibrator.input.sampling.csv -output_file calibrator.extractor_output.1.csv --> <!-- python -m icfree.learner.calibrator -output calibrator.output.calibrated.1.csv -jove_plus 3 -jove_minus 2 -plot calibrator.output.1.png calibrator.output.extractor.1.csv calibrator.input.ref.csv --> <param name="initial_data_file" value="calibrator.input.initial_data.csv" /> @@ -67,13 +69,18 @@ <has_n_lines n="58" /> </assert_contents> </output> + <output name="output_control_points" ftype="csv"> + <assert_contents> + <has_n_lines n="6" /> + </assert_contents> + </output> <output name="output_graph" ftype="png" > <assert_contents> <has_size value="45000" delta="2000" /> </assert_contents> </output> </test> - <test expect_num_outputs="2"> + <test expect_num_outputs="3"> <!-- python -m icfree.learner.extractor -initial_data_file calibrator.input.initial_data.csv -sampling_file calibrator.input.sampling.tsv -output_file calibrator.output.extractor.2.csv -num_samples 20 -num_replicates 3 --> <!-- python -m icfree.learner.calibrator -plot calibrator.output.2.png -output calibrator.output.2.csv -jove_plus 4 -jove_minus 3 -r2_limit 0.9 -num 20 -num_control_points 4 calibrator.output.extractor.2.csv calibrator.input.ref.csv --> <param name="initial_data_file" value="calibrator.input.initial_data.csv" /> @@ -90,14 +97,17 @@ <has_n_lines n="21" /> </assert_contents> </output> + <output name="output_control_points" ftype="csv"> + <assert_contents> + <has_n_lines n="21" /> + </assert_contents> + </output> <output name="output_graph" ftype="png" > <assert_contents> <has_size value="38000" delta="1000" /> </assert_contents> </output> - </test> - </tests> <help><![CDATA[ Calibrator