comparison instructor.xml @ 6:39f049e5b032 draft

planemo upload for repository https://github.com/brsynth/icfree-ml commit b669b043a7cd633a9ba1ac2cf2a7f3ed09c3e92e-dirty

5:caee84791e0d

        python -m icfree.instructor
            '$source_plate_file'
            '$destination_plate_file'
            'instructor.csv'
            --source_plate_type '$adv.source_plate_type'
            --max_transfer_volume '$max_transfer_volume'
            #if str($adv.split_threshold) != ''
                --split_threshold '$split_threshold'
            #end if
            #if str($adv.split_components) != ''
                --split_components '$split_components'
            #end if
    ]]></command>
    <inputs>
        <param name="source_plate_file" type="data" format="csv" label="Source corresponding to plate/wells" help="Output from iCFree plates designer"/>
        <param name="destination_plate_file" type="data" format="csv" label="Destination corresponding to plate/wells" help="Output from iCFree plates designer"/>
        <section name="adv" title="Advanced Options" expanded="false">
            <param name="source_plate_type" type="text" value="default:384PP_AQ_GP3" label="Source plate type" help="Comma-separated list of component and plate type pairs, e.g., 'Component_1:384PP_AQ_CP,Component_2:384PP_AQ_GP3'. Default for all is default:384PP_AQ_GP3." >
                <validator type="empty_field" message="Source plate type is required"/>
            </param>
            <param argument="max_transfer_volume" type="integer" min="1" max="50000" value="500" label="Maximum transfer volume" help="Maximum volume for a single transfer. If not specified, no splitting will be performed." />
            <param argument="split_threshold" type="integer" min="1" max="50000" value="500" label="Split threshold" help="Volume threshold above which transfers need to be split. If not specified, no splitting will be performed." />
            <param name="split_components" type="text" optional="true" label="Split components" help="Comma-separated list of component names to create separate files for." >
            </param>
        </section>
    </inputs>
    <outputs>

6:39f049e5b032

        python -m icfree.instructor
            '$source_plate_file'
            '$destination_plate_file'
            'instructor.csv'
            --source_plate_type '$adv.source_plate_type'
            --max_transfer_volume '$adv.max_transfer_volume'
            #if str($adv.split_threshold) != ''
                --split_threshold '$adv.split_threshold'
            #end if
            #if str($adv.split_components) != ''
                --split_components '$adv.split_components'
            #end if
    ]]></command>
    <inputs>
        <param name="source_plate_file" type="data" format="csv" label="Source corresponding to plate/wells" help="Output from iCFree plates designer"/>
        <param name="destination_plate_file" type="data" format="csv" label="Destination corresponding to plate/wells" help="Output from iCFree plates designer"/>
        <section name="adv" title="Advanced Options" expanded="false">
            <param name="source_plate_type" type="text" value="default:384PP_AQ_GP3" label="Source plate type" help="Comma-separated list of component and plate type pairs, e.g., 'Component_1:384PP_AQ_CP,Component_2:384PP_AQ_GP3'. Default for all is default:384PP_AQ_GP3." >
                <validator type="empty_field" message="Source plate type is required"/>
            </param>
            <param argument="max_transfer_volume" type="float" min="2.5" max="500000" value="100000" label="Maximum transfer volume" help="Maximum volume for a single transfer. If not specified, no splitting will be performed." />
            <param argument="split_threshold" type="float" min="2.5" max="500000" value="100000" label="Split threshold" help="Volume threshold above which transfers need to be split. If not specified, no splitting will be performed." />
            <param name="split_components" type="text" optional="true" label="Split components" help="Comma-separated list of component names to create separate files for." >
            </param>
        </section>
    </inputs>
    <outputs>