Mercurial > repos > tduigou > icfree_instructor
comparison instructor.xml @ 11:e3747a8d8999 draft default tip
planemo upload for repository https://github.com/brsynth/icfree-ml commit 08614ac872d03dfb266e405d5ff6c18f85e11117-dirty
| author | tduigou |
|---|---|
| date | Thu, 12 Sep 2024 07:02:21 +0000 |
| parents | b3b05bfd58a8 |
| children |
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| 10:b3b05bfd58a8 | 11:e3747a8d8999 |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 8 mkdir -p outdir && | |
| 8 python -m icfree.instructor | 9 python -m icfree.instructor |
| 9 '$source_plate_file' | 10 '$source_plate_file' |
| 10 '$destination_plate_file' | 11 '$destination_plate_file' |
| 11 'instructions.csv' | 12 'outdir/instructions.csv' |
| 12 --source_plate_type '$adv.source_plate_type' | 13 --source_plate_type '$adv.source_plate_type' |
| 13 #if str($adv.max_transfer_volume) != '' | 14 #if str($adv.max_transfer_volume) != '' |
| 14 --max_transfer_volume '$adv.max_transfer_volume' | 15 --max_transfer_volume '$adv.max_transfer_volume' |
| 15 #end if | 16 #end if |
| 16 #if str($adv.split_threshold) != '' | 17 #if str($adv.split_threshold) != '' |
| 33 </param> | 34 </param> |
| 34 </section> | 35 </section> |
| 35 </inputs> | 36 </inputs> |
| 36 <outputs> | 37 <outputs> |
| 37 <collection name="output_instructor" type="list" label="${tool.name} - Instructions"> | 38 <collection name="output_instructor" type="list" label="${tool.name} - Instructions"> |
| 38 <discover_datasets pattern="__designation_and_ext__" format="csv" directory="."/> | 39 <discover_datasets pattern="__designation_and_ext__" format="csv" directory="outdir"/> |
| 39 </collection> | 40 </collection> |
| 40 </outputs> | 41 </outputs> |
| 41 <tests> | 42 <tests> |
| 42 <test> | 43 <test> |
| 43 <!-- python -m icfree.instructor plates_designer.source_plate.test-2.csv plates_designer.destination_plate.test-2.csv 'instructor.test-1.csv' -source_plate_type 'default:384PP_AQ_GP3' -max_transfer_volume '500' -split_threshold '500' --> | 44 <!-- python -m icfree.instructor plates_designer.source_plate.test-2.csv plates_designer.destination_plate.test-2.csv 'instructor.test-1.csv' -source_plate_type 'default:384PP_AQ_GP3' -max_transfer_volume '500' -split_threshold '500' --> |