# HG changeset patch
# User tduigou
# Date 1726124541 0
# Node ID e3747a8d899906317e5aebd342632fe81e7b5914
# Parent  b3b05bfd58a8e7235370e5229541a433470836f1
planemo upload for repository https://github.com/brsynth/icfree-ml commit 08614ac872d03dfb266e405d5ff6c18f85e11117-dirty

diff -r b3b05bfd58a8 -r e3747a8d8999 instructor.xml
--- a/instructor.xml	Thu Sep 12 06:54:30 2024 +0000
+++ b/instructor.xml	Thu Sep 12 07:02:21 2024 +0000
@@ -5,10 +5,11 @@
     </macros>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
+        mkdir -p outdir &&
         python -m icfree.instructor
             '$source_plate_file'
             '$destination_plate_file'
-            'instructions.csv'
+            'outdir/instructions.csv'
             --source_plate_type '$adv.source_plate_type'
             #if str($adv.max_transfer_volume) != ''
                 --max_transfer_volume '$adv.max_transfer_volume'
@@ -35,7 +36,7 @@
     </inputs>
     <outputs>
         <collection name="output_instructor" type="list" label="${tool.name} - Instructions">
-            <discover_datasets pattern="__designation_and_ext__" format="csv" directory="."/>
+            <discover_datasets pattern="__designation_and_ext__" format="csv" directory="outdir"/>
         </collection>
     </outputs>
     <tests>