Mercurial > repos > tduigou > lcrgenie
changeset 1:afbbecdcc0e3 draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
| author | tduigou |
|---|---|
| date | Thu, 03 Feb 2022 13:30:30 +0000 |
| parents | 71568c0c83f4 |
| children | 6f447c1584bf |
| files | lcrgenie.xml test-data/LCR_output_lycopene.xlsx |
| diffstat | 2 files changed, 18 insertions(+), 10 deletions(-) [+] |
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--- a/lcrgenie.xml Mon Dec 20 12:20:40 2021 +0000 +++ b/lcrgenie.xml Thu Feb 03 13:30:30 2022 +0000 @@ -1,17 +1,21 @@ -<tool id="LCRGenie" name="LCR Genie" version="1.0.1"> +<tool id="LCRGenie" name="LCR Genie" version="@TOOL_VERSION@" profile="19.09"> <description>Ligase Chain Reaction</description> + <macros> + <token name="@TOOL_VERSION@">1.0.2</token> + </macros> <requirements> - <requirement type="package" version="1.0.1">lcr_genie</requirement> + <requirement type="package" version="@TOOL_VERSION@">lcr_genie</requirement> </requirements> <stdio> - <regex match="WARNING:" level="warning" /> - <regex match="ERROR:" level="fatal" /> - </stdio> + <regex match="WARNING:" level="warning" /> + <regex match="ERROR:" level="fatal" /> + </stdio> <command detect_errors="exit_code"><![CDATA[ python -m lcr_genie - '$LCR_input' - '$LCR_output' - --melting_temp '$adv.melting_temp' + '$LCR_input' + out.xlsx + --melting_temp '$adv.melting_temp' + && cp out.xlsx '$LCR_output' ]]></command> <inputs> <param name="LCR_input" type="data" format="xml" label="Constructs" /> @@ -26,7 +30,11 @@ <test> <!-- test 1: check if identical outputs are produced with default parameters --> <param name="LCR_input" value="LCR_input_lycopene.xml" /> - <output name="LCR_output" file="LCR_output_lycopene.xlsx" ftype="xlsx" compare="sim_size" /> + <output name="LCR_output" > + <assert_contents> + <has_size value="58196" delta="100" /> + </assert_contents> + </output> </test> </tests> <help><![CDATA[ @@ -55,7 +63,7 @@ Version ---------- -1.0.1 +1.0.2 Authors -------