Mercurial > repos > tduigou > neo4jsbml
annotate test-data/PathwayModelisation-2.0.3.json @ 4:94863d48d5da draft
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
author | tduigou |
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date | Mon, 09 Oct 2023 13:35:34 +0000 |
parents | 748d0a0925cb |
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rev | line source |
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748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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1 { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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2 "style": { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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3 "font-family": "sans-serif", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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4 "background-color": "#ffffff", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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5 "background-image": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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6 "background-size": "100%", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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7 "node-color": "#ffffff", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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8 "border-width": 4, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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9 "border-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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10 "radius": 50, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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11 "node-padding": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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12 "node-margin": 2, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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13 "outside-position": "auto", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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14 "node-icon-image": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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15 "node-background-image": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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16 "icon-position": "inside", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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17 "icon-size": 64, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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18 "caption-position": "inside", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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19 "caption-max-width": 200, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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20 "caption-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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21 "caption-font-size": 50, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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22 "caption-font-weight": "normal", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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23 "label-position": "inside", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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24 "label-display": "pill", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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25 "label-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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26 "label-background-color": "#ffffff", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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27 "label-border-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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28 "label-border-width": 4, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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29 "label-font-size": 40, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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30 "label-padding": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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31 "label-margin": 4, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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32 "directionality": "directed", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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33 "detail-position": "inline", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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34 "detail-orientation": "parallel", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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35 "arrow-width": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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36 "arrow-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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37 "margin-start": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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38 "margin-end": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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39 "margin-peer": 20, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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40 "attachment-start": "normal", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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41 "attachment-end": "normal", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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42 "relationship-icon-image": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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43 "type-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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44 "type-background-color": "#ffffff", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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45 "type-border-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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46 "type-border-width": 0, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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47 "type-font-size": 16, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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48 "type-padding": 5, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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49 "property-position": "outside", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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50 "property-alignment": "colon", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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changeset
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51 "property-color": "#000000", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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52 "property-font-size": 16, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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53 "property-font-weight": "normal" |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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54 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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55 "nodes": [ |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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56 { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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57 "id": "n0", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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58 "position": { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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59 "x": 0, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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60 "y": 0 |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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61 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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62 "caption": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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63 "style": {}, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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64 "labels": [], |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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65 "properties": {} |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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66 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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67 { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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68 "id": "n1", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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69 "position": { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
changeset
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70 "x": 884.6635137872785, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
diff
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71 "y": 380.3581544878789 |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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72 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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73 "caption": "", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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74 "labels": [ |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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75 "Compartment" |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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76 ], |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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77 "properties": { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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78 "id": "str (required)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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79 "name": "str (optional)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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80 "metaid": "str (optional)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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81 "sboTerm": "str (optional)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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82 "spatialDimensions": "int (optional)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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83 "size": "int (optional)", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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84 "constant": "bool (optional)" |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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85 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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86 "style": {} |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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87 }, |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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88 { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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89 "id": "n2", |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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90 "position": { |
748d0a0925cb
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
tduigou
parents:
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91 "x": 560.2494455950304, |
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92 "y": 380.3581544878789 |
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93 }, |
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94 "caption": "", |
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95 "labels": [ |
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96 "Species" |
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97 ], |
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98 "properties": { |
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99 "id": "str (required)", |
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100 "initialAmount": "float (optional)", |
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101 "hasOnlySubstanceUnits": "bool (optional)", |
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102 "boundaryCondition": "bool (optional)", |
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103 "constant": "bool (optional)" |
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104 }, |
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105 "style": {} |
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106 }, |
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107 { |
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108 "id": "n3", |
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109 "position": { |
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110 "x": 432.24944559503035, |
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111 "y": 204.94864525928773 |
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112 }, |
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113 "caption": "", |
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114 "labels": [ |
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115 "Parameter" |
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116 ], |
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117 "properties": { |
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118 "id": "str (required)", |
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119 "name": "str (optional)", |
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120 "metaid": "str (optional)", |
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121 "sboTerm": "str (optional)", |
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122 "value": "float (optional)", |
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123 "constant": "bool" |
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124 }, |
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125 "style": {} |
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126 }, |
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127 { |
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128 "id": "n4", |
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129 "position": { |
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130 "x": 833.1523435518487, |
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131 "y": 204.94864525928796 |
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132 }, |
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133 "caption": "", |
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134 "labels": [ |
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135 "Reaction" |
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136 ], |
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137 "properties": { |
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138 "id": "str (required)", |
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139 "name": "str (optional)", |
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140 "metaid": "str (optional)", |
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141 "sboTerm": "str (optional)", |
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142 "reversible": "bool" |
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143 }, |
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144 "style": {} |
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145 }, |
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146 { |
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147 "id": "n5", |
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148 "position": { |
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149 "x": 129, |
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150 "y": 204.94864525928773 |
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151 }, |
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152 "caption": "", |
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153 "labels": [ |
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154 "model" |
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155 ], |
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156 "properties": { |
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157 "id": "str", |
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158 "name": "str", |
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159 "metaid": "str", |
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160 "sboTerm": "str" |
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161 }, |
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162 "style": {} |
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163 }, |
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164 { |
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165 "id": "n6", |
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166 "position": { |
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167 "x": 129, |
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168 "y": 380.3581544878789 |
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169 }, |
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170 "caption": "", |
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171 "labels": [ |
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172 "UnitDefinition" |
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173 ], |
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174 "properties": { |
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175 "id": "str (optional)", |
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176 "name": "str (optional)", |
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177 "metaid": "str (optional)", |
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178 "sboTerm": "str (optional)" |
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179 }, |
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180 "style": {} |
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181 }, |
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182 { |
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183 "id": "n7", |
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184 "position": { |
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185 "x": 560.2494455950304, |
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186 "y": -4 |
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187 }, |
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188 "caption": "", |
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189 "labels": [ |
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190 "GeneProduct" |
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191 ], |
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192 "properties": { |
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193 "id": "str", |
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194 "name": "str" |
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195 }, |
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196 "style": {} |
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197 } |
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198 ], |
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199 "relationships": [ |
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200 { |
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201 "id": "n0", |
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202 "fromId": "n2", |
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203 "toId": "n1", |
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204 "type": "IN_COMPARTMENT", |
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205 "properties": {}, |
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206 "style": {} |
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207 }, |
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208 { |
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209 "id": "n1", |
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210 "fromId": "n4", |
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211 "toId": "n2", |
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212 "type": "HAS_PRODUCT", |
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213 "properties": {}, |
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214 "style": {} |
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215 }, |
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216 { |
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217 "id": "n2", |
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218 "fromId": "n4", |
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219 "toId": "n3", |
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220 "type": "HAS_LOWERFLUXBOUND", |
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221 "properties": {}, |
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222 "style": {} |
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223 }, |
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224 { |
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225 "id": "n3", |
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226 "fromId": "n5", |
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227 "toId": "n3", |
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228 "type": "HAS_PARAMETER", |
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229 "properties": {}, |
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230 "style": {} |
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231 }, |
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232 { |
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233 "id": "n4", |
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234 "type": "HAS_UNITS", |
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235 "style": {}, |
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236 "properties": {}, |
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237 "fromId": "n3", |
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238 "toId": "n6" |
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239 }, |
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240 { |
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241 "id": "n5", |
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242 "fromId": "n4", |
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243 "toId": "n3", |
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244 "type": "HAS_UPPERFLUXBOUND", |
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245 "properties": {}, |
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246 "style": {} |
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247 }, |
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248 { |
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249 "id": "n6", |
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250 "fromId": "n4", |
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251 "toId": "n7", |
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252 "type": "IS_IMPLIED", |
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253 "properties": {}, |
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254 "style": {} |
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255 }, |
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256 { |
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257 "id": "n7", |
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258 "fromId": "n2", |
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259 "toId": "n4", |
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260 "type": "IS_REACTANT", |
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261 "properties": {}, |
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262 "style": {} |
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263 } |
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264 ] |
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265 } |