annotate test-data/PathwayModelisation-2.0.3.json @ 1:baf9eed5353b draft

planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f

{
  "style": {
    "font-family": "sans-serif",
    "background-color": "#ffffff",
    "background-image": "",
    "background-size": "100%",
    "node-color": "#ffffff",
    "border-width": 4,
    "border-color": "#000000",
    "radius": 50,
    "node-padding": 5,
    "node-margin": 2,
    "outside-position": "auto",
    "node-icon-image": "",
    "node-background-image": "",
    "icon-position": "inside",
    "icon-size": 64,
    "caption-position": "inside",
    "caption-max-width": 200,
    "caption-color": "#000000",
    "caption-font-size": 50,
    "caption-font-weight": "normal",
    "label-position": "inside",
    "label-display": "pill",
    "label-color": "#000000",
    "label-background-color": "#ffffff",
    "label-border-color": "#000000",
    "label-border-width": 4,
    "label-font-size": 40,
    "label-padding": 5,
    "label-margin": 4,
    "directionality": "directed",
    "detail-position": "inline",
    "detail-orientation": "parallel",
    "arrow-width": 5,
    "arrow-color": "#000000",
    "margin-start": 5,
    "margin-end": 5,
    "margin-peer": 20,
    "attachment-start": "normal",
    "attachment-end": "normal",
    "relationship-icon-image": "",
    "type-color": "#000000",
    "type-background-color": "#ffffff",
    "type-border-color": "#000000",
    "type-border-width": 0,
    "type-font-size": 16,
    "type-padding": 5,
    "property-position": "outside",
    "property-alignment": "colon",
    "property-color": "#000000",
    "property-font-size": 16,
    "property-font-weight": "normal"
  },
  "nodes": [
    {
      "id": "n0",
      "position": {
        "x": 0,
        "y": 0
      },
      "caption": "",
      "style": {},
      "labels": [],
      "properties": {}
    },
    {
      "id": "n1",
      "position": {
        "x": 884.6635137872785,
        "y": 380.3581544878789
      },
      "caption": "",
      "labels": [
        "Compartment"
      ],
      "properties": {
        "id": "str (required)",
        "name": "str (optional)",
        "metaid": "str (optional)",
        "sboTerm": "str (optional)",
        "spatialDimensions": "int (optional)",
        "size": "int (optional)",
        "constant": "bool (optional)"
      },
      "style": {}
    },
    {
      "id": "n2",
      "position": {
        "x": 560.2494455950304,
        "y": 380.3581544878789
      },
      "caption": "",
      "labels": [
        "Species"
      ],
      "properties": {
        "id": "str (required)",
        "initialAmount": "float (optional)",
        "hasOnlySubstanceUnits": "bool (optional)",
        "boundaryCondition": "bool (optional)",
        "constant": "bool (optional)"
      },
      "style": {}
    },
    {
      "id": "n3",
      "position": {
        "x": 432.24944559503035,
        "y": 204.94864525928773
      },
      "caption": "",
      "labels": [
        "Parameter"
      ],
      "properties": {
        "id": "str (required)",
        "name": "str (optional)",
        "metaid": "str (optional)",
        "sboTerm": "str (optional)",
        "value": "float (optional)",
        "constant": "bool"
      },
      "style": {}
    },
    {
      "id": "n4",
      "position": {
        "x": 833.1523435518487,
        "y": 204.94864525928796
      },
      "caption": "",
      "labels": [
        "Reaction"
      ],
      "properties": {
        "id": "str (required)",
        "name": "str (optional)",
        "metaid": "str (optional)",
        "sboTerm": "str (optional)",
        "reversible": "bool"
      },
      "style": {}
    },
    {
      "id": "n5",
      "position": {
        "x": 129,
        "y": 204.94864525928773
      },
      "caption": "",
      "labels": [
        "model"
      ],
      "properties": {
        "id": "str",
        "name": "str",
        "metaid": "str",
        "sboTerm": "str"
      },
      "style": {}
    },
    {
      "id": "n6",
      "position": {
        "x": 129,
        "y": 380.3581544878789
      },
      "caption": "",
      "labels": [
        "UnitDefinition"
      ],
      "properties": {
        "id": "str (optional)",
        "name": "str (optional)",
        "metaid": "str (optional)",
        "sboTerm": "str (optional)"
      },
      "style": {}
    },
    {
      "id": "n7",
      "position": {
        "x": 560.2494455950304,
        "y": -4
      },
      "caption": "",
      "labels": [
        "GeneProduct"
      ],
      "properties": {
        "id": "str",
        "name": "str"
      },
      "style": {}
    }
  ],
  "relationships": [
    {
      "id": "n0",
      "fromId": "n2",
      "toId": "n1",
      "type": "IN_COMPARTMENT",
      "properties": {},
      "style": {}
    },
    {
      "id": "n1",
      "fromId": "n4",
      "toId": "n2",
      "type": "HAS_PRODUCT",
      "properties": {},
      "style": {}
    },
    {
      "id": "n2",
      "fromId": "n4",
      "toId": "n3",
      "type": "HAS_LOWERFLUXBOUND",
      "properties": {},
      "style": {}
    },
    {
      "id": "n3",
      "fromId": "n5",
      "toId": "n3",
      "type": "HAS_PARAMETER",
      "properties": {},
      "style": {}
    },
    {
      "id": "n4",
      "type": "HAS_UNITS",
      "style": {},
      "properties": {},
      "fromId": "n3",
      "toId": "n6"
    },
    {
      "id": "n5",
      "fromId": "n4",
      "toId": "n3",
      "type": "HAS_UPPERFLUXBOUND",
      "properties": {},
      "style": {}
    },
    {
      "id": "n6",
      "fromId": "n4",
      "toId": "n7",
      "type": "IS_IMPLIED",
      "properties": {},
      "style": {}
    },
    {
      "id": "n7",
      "fromId": "n2",
      "toId": "n4",
      "type": "IS_REACTANT",
      "properties": {},
      "style": {}
    }
  ]
}