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comparison neo4jsbml.xml @ 3:7a8d6e36f5af draft

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planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
author tduigou
date Mon, 09 Oct 2023 12:05:30 +0000
parents 0dbe53bc9519
children 94863d48d5da
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2:0dbe53bc9519 3:7a8d6e36f5af
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">neo4jsbml</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">neo4jsbml</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 neo4jsbml 10 python -m neo4jsbml
11 --input-auradb-file '$input_auradb_file' 11 --input-auradb-file '$input_auradb_file'
12 --input-file-sbml '$input_file_sbml' 12 --input-file-sbml '$input_file_sbml'
13 --input-modelisation-json '$input_modelisation_json' 13 --input-modelisation-json '$input_modelisation_json'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
48 48
49 Inputs 49 Inputs
50 ------ 50 ------
51 51
52 Database parameters 52 Database parameters
53 - **Protocol**: choose the protocol (default: neo4j) 53 | **Protocol**: choose the protocol (default: neo4j)
54 - **Url of the database**: define the url of the database 54 | **Url of the database**: define the url of the database
55 - **Port of the database**: define the port of the database (default: 7687) 55 | **Port of the database**: define the port of the database (default: 7687)
56 - **Username of the database**: User name of the database 56 | **Username of the database**: User name of the database
57 - **Password of the database**: file with the password 57 | **Password of the database**: file with the password
58 - **Database name**: database name 58 | **Database name**: database name
59 59
60 Input 60 Input
61 - **SBML model**: SBML model 61 - **SBML model**: SBML model
62 - **Identifier of the model**: Associate an ID to the nodes 62 - **Identifier of the model**: Associate an ID to the nodes
63 - **Arrow's schema**: Schema created with Arrow 63 - **Arrow's schema**: Schema created with Arrow