# HG changeset patch
# User tduigou
# Date 1696860476 0
# Node ID 6941e7dc5117a6e9029e87a5837e60584d863ec2
# Parent  94863d48d5da0009267092d11e43d0901a0b34c4
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 8dd843aac9f23dd9e0036c48914f20889d894ecc

diff -r 94863d48d5da -r 6941e7dc5117 neo4jsbml.xml
--- a/neo4jsbml.xml	Mon Oct 09 13:35:34 2023 +0000
+++ b/neo4jsbml.xml	Mon Oct 09 14:07:56 2023 +0000
@@ -13,7 +13,7 @@
             #if str($input_tag_str) != ""
                 --input-tag-str '$input_tag_str'
             #end if
-            --input-modelisation-json '$input_modelisation_json' | tee '$output_log'
+            --input-modelisation-json '$input_modelisation_json' | tee '$output'
     ]]></command>
     <inputs>
         <param name="input_auradb_file" type="data" format="txt" label="Config file provided by AuraDB"/>
@@ -24,7 +24,7 @@
         <param name="input_modelisation_json" type="data" format="json" label="Arrow's schema"/>
     </inputs>
     <outputs>
-        <data name="output_log" format="txt" label="${tool.name} - log" />
+        <data name="output" format="txt" label="${tool.name} - log" />
     </outputs>
     <help><![CDATA[
 Neo4jSbml
@@ -54,17 +54,9 @@
 Inputs
 ------
 
-Database parameters
-- **Protocol**: choose the protocol (default: neo4j)
-- **Url of the database**: define the url of the database
-- **Port of the database**: define the port of the database (default: 7687)
-- **Username of the database**: User name of the database
-- **Password of the database**: file with the password
-- **Database name**: database name
-
-Input
+- **AuraDB config like**: a txt file with these variables NEO4J_URI, NEO4J_USERNAME, NEO4J_PASSWORD and AURA_INSTANCENAME. One per line like: NEO4J_USERNAME=neo4j
 - **SBML model**: SBML model
-- **Identifier of the model**: Associate an ID to the nodes
+- **Identifier of the model**: Associate an ID to the nodes (optional)
 - **Arrow's schema**: Schema created with Arrow
 
 Ouput