# HG changeset patch # User tduigou # Date 1682904591 0 # Node ID 34e11d0590fa9facde62c7a09107be857ed2c7ef # Parent 593e0f7871722937d168c9793c8f0bbb5edb9615 planemo upload for repository ['https://github.com/brsynth/icfree-ml', 'https://github.com/pablocarb/doebase'] commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6 diff -r 593e0f787172 -r 34e11d0590fa config/job_conf.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/config/job_conf.xml Mon May 01 01:29:51 2023 +0000 @@ -0,0 +1,1 @@ + diff -r 593e0f787172 -r 34e11d0590fa config/tool_conf.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/config/tool_conf.xml Mon May 01 01:29:51 2023 +0000 @@ -0,0 +1,3 @@ +
+ +
diff -r 593e0f787172 -r 34e11d0590fa img/image3.png Binary file img/image3.png has changed diff -r 593e0f787172 -r 34e11d0590fa img/image46.png Binary file img/image46.png has changed diff -r 593e0f787172 -r 34e11d0590fa macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon May 01 01:29:51 2023 +0000 @@ -0,0 +1,15 @@ + + 0 + MIT + + + + + + + + + + + + diff -r 593e0f787172 -r 34e11d0590fa optdoe.xml --- a/optdoe.xml Mon Oct 24 10:22:28 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,262 +0,0 @@ - - An optimal design of experiments (DoE) base package for synthetic biology - - 0 - 2.0.2 - - - doebase - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - - - - - - - - - - - - - - `_ for more codons. - -Output ------- - -* **Constructs**\ : Output SBOL file. It contains some combinations of constructs according to the algorithm described above. - -Project Link ------------- - -* `Original Project `_ - -License -------- - -`MIT `_ - -Acknowledgments ---------------- - -* Joan Hérisson -* Thomas Duigou - ]]> - - - -
\ No newline at end of file diff -r 593e0f787172 -r 34e11d0590fa test-data/converter_proCFPS_parameters.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/converter_proCFPS_parameters.tsv Mon May 01 01:29:51 2023 +0000 @@ -0,0 +1,17 @@ +Parameter maxValue stockConcentration deadVolume Ratios +Mg-glutamate 4 168 0 0.0 0.1 0.3 0.5 1.0 +k-glutamate 80 3360 0 +CoA 0.26 210 0 +3-PGA 30 1400 0 +NTP 1.5 630 0 +NAD 0.33 138.6 0 +Folinic acid 0.068 28.56 0 +Spermidine 1 420 0 +tRNA 0.2 84 0 +Amino acids 1.5 6 0 +CAMP 0.75 200 0 +Extract 30 300 2000 1 +HEPES 50 2100 0 1 +PEG 2 200 4000 1 +Promoter 10 300 0 1 +RBS 10 200 0 1 \ No newline at end of file diff -r 593e0f787172 -r 34e11d0590fa test-data/sampler_sampling.test-1.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sampler_sampling.test-1.tsv Mon May 01 01:29:51 2023 +0000 @@ -0,0 +1,100 @@ +Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS 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