# HG changeset patch
# User tduigou
# Date 1741252953 0
# Node ID 22ceb8cf65accf9acfd663c574fab92ea04b4d9e
# Parent  da083c323f5ce891e00d0e5e966196cee34124ae
planemo upload for repository https://github.com/brsynth/retropath2_wrapper commit 7aa6b6c68cf3c15f93b82fd7ed12c6ec5ab4517f

diff -r da083c323f5c -r 22ceb8cf65ac retropath2_wrapper.xml
--- a/retropath2_wrapper.xml	Wed Jul 24 08:41:51 2024 +0000
+++ b/retropath2_wrapper.xml	Thu Mar 06 09:22:33 2025 +0000
@@ -2,7 +2,7 @@
     <description>Build a reaction network from a set of source compounds to a set of sink compounds</description>
     <macros>
         <token name="@VERSION_SUFFIX@">0</token>
-        <token name="@TOOL_VERSION@">3.2.0</token>
+        <token name="@TOOL_VERSION@">3.3.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">retropath2_wrapper</requirement>
@@ -40,6 +40,9 @@
             #if str($adv.network) == "true":
                 --no-network
             #end if
+            #if str($adv.quiet) == "true":
+                --quiet
+            #end if
             --msc_timeout '$adv.timeout' &&
         if compgen -G 'out/*_scope.csv' > /dev/null; then
             cp out/*_scope.csv '$Reaction_Network';
@@ -70,6 +73,7 @@
             <param name="mwmax_source" type="integer" value="1000" min="0" max="2000" label="Molecular weight of source (Da)" help="The molecular weight cutoff (in Da), above which initial source (ie target) and intermediate compounds will be filtered out." />
             <param name="timeout" type="integer" value="60" min="30" max="600" label="Timeout (min)" help="Maximal time of RetroPath2.0 execution (60 minutes by default)." />
             <param name="network" type="boolean" checked="false" label="Do not use network" />
+            <param name="quiet" type="boolean" checked="false" label="Do not return error codes" />
         </section>
     </inputs>
     <outputs>