# HG changeset patch # User tduigou # Date 1744960394 0 # Node ID 2f79335c4137baaf5623a653e732fcb828437a1e # Parent eb072181af575648587508f55407ce98d1cb6c4d planemo upload for repository https://github.com/brsynth/retropath2_wrapper commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae diff -r eb072181af57 -r 2f79335c4137 retropath2_wrapper.xml --- a/retropath2_wrapper.xml Fri Mar 07 10:19:05 2025 +0000 +++ b/retropath2_wrapper.xml Fri Apr 18 07:13:14 2025 +0000 @@ -1,7 +1,7 @@ Build a reaction network from a set of source compounds to a set of sink compounds - 0 + 1 3.3.1 @@ -24,6 +24,10 @@ empty_sink.csv && + #set $sinkfile = "empty_sink.csv" + #end if python -m retropath2_wrapper '$sinkfile' '$rulesfile' @@ -37,10 +41,10 @@ --dmax '$adv.dmax' --mwmax_source '$adv.mwmax_source' --kinstall "\${TMPDIR:-.}" - #if str($adv.network) == "true": + #if not $adv.network: --no-network #end if - #if str($adv.quiet) == "true": + #if not $sink.error_codes: --quiet #end if --msc_timeout '$adv.timeout' && @@ -52,7 +56,16 @@ ]]> - + + + + + + + + + + @@ -72,8 +85,7 @@ - - + @@ -87,10 +99,22 @@ - + + + + + + + + + + + + + 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+"[target]","TRS_0_2_2","[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]>>[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]","[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]","InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)","[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]","InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)","0","[None]","16","[RR-02-224bf1f3c9ea5f3c-16-F, 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