# HG changeset patch
# User tduigou
# Date 1682904077 0
# Node ID 9c11cb2b1a71906c0538f59b56ea543ddf7e1d41
# Parent  2452952f7bc2da1c9ad7979807fc4dd33f268855
planemo upload for repository https://github.com/brsynth/rp2paths commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6

diff -r 2452952f7bc2 -r 9c11cb2b1a71 LICENSE.txt
--- a/LICENSE.txt	Mon Apr 03 08:15:46 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-MIT License
-
-Copyright (c) 2020 Jean-Loup Faulon's group & INRA
-Copyright (c) 2020 University of Evry / Paris-Saclay
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
diff -r 2452952f7bc2 -r 9c11cb2b1a71 README.md
--- a/README.md	Mon Apr 03 08:15:46 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-# rp2paths -- Enumerate and seperate the different pathways generated by RetroPath2.0
-
-The open-source software package rp2paths is available here : https://github.com/brsynth/rp2paths
-
-## How to run rp2paths wrapper tests
-
-In order to execute tests on rp2paths wrapper, you need to:
-
-  - Connect to your galaxy instance in interactive mode:
-
-  ```bash
-    docker exec -it -u root galaxy_galaxy_1 bash
-  ```
-  - Copy all the contents of `test-data` folder into your own test-data directory which is located in your local galaxy instance : `/galaxy/test-data`. It contains all the input files and expected output files needed for the tests.
-
-  - Install Planemo:
-  You can see here the documentation for Planemo Installation : https://planemo.readthedocs.io/en/latest/installation.html
-  Note that they recommand to install Planemo by setting up a virtual environment:
-
-  ```bash
-  python3 -m venv planemo
-  . planemo/bin/activate
-  pip install -U planemo
-  ```
-
-  - run the tests:
-
-  ```bash
-  planemo test --conda_channels conda-forge,brsynth --conda_debug tools/BRSynthTools/rp2paths/wrap.xml
-  ```
-
-  IMPORTANT: Maybe you will need to remove CONDA from your PATH for the command `planemo test` to run correctly. To do that, you can edit this file `~/.bashrc`, comment this line `PATH="/root/anaconda3/bin:$PATH"` and save changes.
-
-  Planemo will output an html test summary `tool_test_output.html`.
\ No newline at end of file
diff -r 2452952f7bc2 -r 9c11cb2b1a71 rp2paths.xml
--- a/rp2paths.xml	Mon Apr 03 08:15:46 2023 +0000
+++ b/rp2paths.xml	Mon May 01 01:21:17 2023 +0000
@@ -1,8 +1,7 @@
-<tool id="rp2paths" name="RP2paths" version="@TOOL_VERSION@" profile="21.09" licence="@LICENSE@">
+<tool id="rp2paths" name="RP2paths" version="@TOOL_VERSION@" profile="21.09" license="MIT">
     <description>Enumerate and seperate the different pathways generated by RetroPath2.0</description>
     <macros>
         <token name="@TOOL_VERSION@">1.5.0</token>
-        <token name="@LICENSE@">MIT</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">rp2paths</requirement>