Mercurial > repos > tduigou > rpcompletion
changeset 5:37bed74bbd44 draft default tip
planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
| author | tduigou |
|---|---|
| date | Fri, 18 Nov 2022 16:07:59 +0000 |
| parents | e8d56cb2be03 |
| children | |
| files | rpcompletion.xml |
| diffstat | 1 files changed, 10 insertions(+), 15 deletions(-) [+] |
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--- a/rpcompletion.xml Wed Sep 21 09:41:34 2022 +0000 +++ b/rpcompletion.xml Fri Nov 18 16:07:59 2022 +0000 @@ -1,7 +1,8 @@ -<tool id="rpcompletion" name="Complete Reactions" version="@TOOL_VERSION@" profile="21.09"> - <description>From the output of RP2Paths and RetroPath2.0, generate SBML unique and complete (with cofactors) pathways with mono-component reactions</description> +<tool id="rpcompletion" name="Complete Reactions" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> + <description>Completes mono-component reactions output by RetroPath2.0 with the appropriate cofactors</description> <macros> - <token name="@TOOL_VERSION@">5.13.1</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@TOOL_VERSION@">6.0.1</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> @@ -20,10 +21,11 @@ --upper_flux_bound '$adv.upper_flux_bound' --lower_flux_bound '$adv.lower_flux_bound' --max_subpaths_filter '$adv.max_subpaths_filter' + --cache-dir "\${TMPDIR:-.}" ]]></command> <inputs> <param name="rp2paths_pathways" type="data" format="csv" label="RP2paths pathways" /> - <param name="rp2paths_compounds" type="data" format="tsv" label="RP2paths compounds" /> + <param name="rp2paths_compounds" type="data" format="tabular" label="RP2paths compounds" /> <param name="rp2_pathways" type="data" format="csv" label="RetroPath2.0 metabolic network" /> <param name="sink" type="data" format="csv" label="Sink from SBML" /> <section name="adv" title="Advanced Options" expanded="false"> @@ -88,17 +90,6 @@ --------------------- * `GitHub <https://github.com/brsynth/rptools>`_ -Version ----------- - -5.13.1 - -Authors -------- - -* **Melchior du Lac** -* **Joan Hérisson** - Acknowledgments --------------- @@ -110,4 +101,8 @@ `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ ]]></help> + <creator> + <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" /> + <person givenName="Melchior" familyName="du Lac" identifier="https://orcid.org/0000-0002-9984-4689" /> + </creator> </tool> \ No newline at end of file