annotate test-data/rp_001_0006.xml @ 1:bab690866445 draft

"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
  <model metaid="_9abfd4c46acaab90583da6a3a85bb5000b25ca6dcac80825140a206a3c167d09" id="RP_model_001_0006" name="001_0006" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
    <listOfCompartments>
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        <annotation>
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              <bqbiol:is>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
                  <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
                  <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
                  <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
                </rdf:Bag>
              </bqbiol:is>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </compartment>
    </listOfCompartments>
    <listOfSpecies>
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        <annotation>
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                <brsynth:fba_fraction_shadow_price>
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                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="1245.5794452419402"/>
                  <brsynth:units value="kilojoule / mole"/>
                </brsynth:thermo_standard_dg_formation>
              </brsynth:brsynth>
            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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                <rdf:Bag/>
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                <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
                <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
                <brsynth:fba_biomass_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-1833.2298341488033"/>
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                </brsynth:thermo_standard_dg_formation>
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        <annotation>
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                <brsynth:smiles/>
                <brsynth:inchi/>
                <brsynth:inchikey/>
                <brsynth:fba_biomass_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-2236.551670011945"/>
                  <brsynth:units value="kilojoule / mole"/>
                </brsynth:thermo_standard_dg_formation>
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        </annotation>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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                <brsynth:thermo_standard_dg_formation>
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                  <brsynth:units value="kilojoule / mole"/>
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              </brsynth:brsynth>
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          </rdf:RDF>
        </annotation>
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        <annotation>
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                <brsynth:smiles/>
                <brsynth:inchi/>
                <brsynth:inchikey/>
                <brsynth:fba_biomass_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-2261.3806478863044"/>
                  <brsynth:units value="kilojoule / mole"/>
                </brsynth:thermo_standard_dg_formation>
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        </annotation>
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        <annotation>
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                <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
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                <brsynth:thermo_standard_dg_formation>
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                  <brsynth:units value="kilojoule / mole"/>
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              </brsynth:brsynth>
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          </rdf:RDF>
        </annotation>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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                <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
                <brsynth:fba_biomass_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-1966.8036657706114"/>
                  <brsynth:units value="kilojoule / mole"/>
                </brsynth:thermo_standard_dg_formation>
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          </rdf:RDF>
        </annotation>
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                <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
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                  <brsynth:units value="kilojoule / mole"/>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
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    </listOfSpecies>
    <listOfParameters>
      <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
      <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
    </listOfParameters>
    <listOfReactions>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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                <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
                <brsynth:rule_ids>
                  <brsynth:RR-02-90bcfd187709eb1b-14-F/>
                </brsynth:rule_ids>
                <brsynth:tmpl_rxn_ids>
                  <brsynth:MNXR132232/>
                </brsynth:tmpl_rxn_ids>
                <brsynth:rule_score value="0.5706379442030705"/>
                <brsynth:idx_in_path value="1"/>
                <brsynth:selenzy/>
                <brsynth:fba_biomass>
                  <brsynth:value value="0.0"/>
                  <brsynth:units value="gDW / gDW / hour"/>
                </brsynth:fba_biomass>
                <brsynth:fba_fraction>
                  <brsynth:value value="0.9388532834589367"/>
                  <brsynth:units value="milimole / gDW / hour"/>
                </brsynth:fba_fraction>
                <brsynth:thermo_dG0_prime>
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                  <brsynth:error value="7.250256007547839"/>
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                <brsynth:thermo_dG_prime>
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                <brsynth:thermo_dG>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
        <listOfReactants>
          <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
          <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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                <brsynth:thermo_dGm_prime>
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                <brsynth:thermo_dG_prime>
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                <brsynth:thermo_dG>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
        <listOfReactants>
          <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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  </model>
</sbml>