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comparison rpranker.xml @ 2:ebbdb240c507 draft

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planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty
author tduigou
date Fri, 21 Oct 2022 14:57:59 +0000
parents bab690866445
children 422a5c9f3583
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1:bab690866445 2:ebbdb240c507
1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@"> 1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
2 <description>Rank heterologous pathways according to their global score</description> 2 <description>Rank heterologous pathways according to their global score</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">5.12.1</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@TOOL_VERSION@">5.13.1</token>
5 </macros> 6 </macros>
6 <requirements> 7 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
8 </requirements> 9 </requirements>
9 <stdio> 10 <stdio>
17 '$input' 18 '$input'
18 #end for 19 #end for
19 > '$sorted_pathways' 20 > '$sorted_pathways'
20 ]]></command> 21 ]]></command>
21 <inputs> 22 <inputs>
22 <param name="pathway_collection" type="data_collection" format="xml" collection_type="list" label="Pathways" /> 23 <param name="pathway_collection" type="data_collection" format="sbml" collection_type="list" label="Pathways" />
23 </inputs> 24 </inputs>
24 <outputs> 25 <outputs>
25 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> 26 <data name="sorted_pathways" format="csv" label="Ranked Pathways" />
26 </outputs> 27 </outputs>
27 <tests> 28 <tests>
52 Input 53 Input
53 ----- 54 -----
54 55
55 Required: 56 Required:
56 57
57 * **pathways**\ : (list of string) Paths to pathway (rpSBML) files 58 * **Pathways**\ : List of pathway files (rpSBML)
58 59
59 Output 60 Output
60 ------ 61 ------
61 62
62 * **output**\ : (string) Sorted names and scores of pathways 63 * **Ranked Pathways**\ : Sorted names and scores of pathways
63 64
64 Project Links 65 Project Links
65 ------------------ 66 ------------------
66 67
67 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ 68 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_
68 69
69 Version
70 ----------
71
72 5.12.1
73
74 License 70 License
75 ------- 71 -------
76 72
77 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ 73 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
78
79 Authors
80 -------
81
82 * **Joan Hérisson**
83 74
84 Acknowledgments 75 Acknowledgments
85 --------------- 76 ---------------
86 77
87 * Thomas Duigou 78 * Thomas Duigou
88 79
89 ]]></help> 80 ]]></help>
81 <creator>
82 <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" />
83 </creator>
90 </tool> 84 </tool>