Mercurial > repos > tduigou > rptools_rpcompletion

comparison test-data/rp_003_0001.xml @ 0:ae16d7ce27d1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author tduigou
date Tue, 28 Mar 2023 12:08:32 +0000
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-1:000000000000 0:ae16d7ce27d1
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="d4bfc4fec7c42e9de20c2ade1a21933a8c1ca015d4ca77b2b5f95790e798931c" id="RP_model_003_0001" name="003_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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36 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
37 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
38 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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42 <brsynth:fba_fraction_shadow_price>
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93 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
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101 <brsynth:thermo_standard_dg_formation>
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108 </annotation>
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122 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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136 </annotation>
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182 <brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
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190 </rdf:BRSynth>
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194 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
195 <annotation>
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205 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
206 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
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218 </rdf:BRSynth>
219 </rdf:RDF>
220 </annotation>
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241 <brsynth:thermo_standard_dg_formation>
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246 </rdf:BRSynth>
247 </rdf:RDF>
248 </annotation>
249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
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260 <bqbiol:is>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
266 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
268 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.81"/>
269 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
270 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.84"/>
271 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
272 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.92"/>
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292 <brsynth:MNXR116653/>
293 <brsynth:MNXR100621/>
294 <brsynth:MNXR99634/>
295 <brsynth:MNXR112069/>
296 <brsynth:MNXR99650/>
297 <brsynth:MNXR109677/>
298 <brsynth:MNXR113141/>
299 <brsynth:MNXR105052/>
300 <brsynth:MNXR109713/>
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304 <brsynth:MNXR112250/>
305 <brsynth:MNXR112251/>
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308 <brsynth:MNXR117266/>
309 <brsynth:MNXR139515/>
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312 <brsynth:MNXR116655/>
313 <brsynth:MNXR103150/>
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331 <brsynth:units value="kilojoule / mole"/>
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341 <brsynth:units value="kilojoule / mole"/>
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346 <brsynth:units value="kilojoule / mole"/>
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348 </brsynth:brsynth>
349 </rdf:BRSynth>
350 </rdf:RDF>
351 </annotation>
352 <listOfReactants>
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354 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
355 </listOfReactants>
356 <listOfProducts>
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420 </rdf:RDF>
421 </annotation>
422 <listOfReactants>
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424 </listOfReactants>
425 <listOfProducts>
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622 </groups:listOfMembers>
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624 </groups:listOfGroups>
625 </model>
626 </sbml>