# HG changeset patch
# User tduigou
# Date 1763388964 0
# Node ID 8b2eaf460ee25b28c2f9a8e0e8e805094d813a75
# Parent  1b76c07c3156acd23df96493103b17b701adf1cc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 5bbc8d3928e085c96114fea3d093447ed85b437a

diff -r 1b76c07c3156 -r 8b2eaf460ee2 macros.xml
--- a/macros.xml	Fri Oct 24 09:46:35 2025 +0000
+++ b/macros.xml	Mon Nov 17 14:16:04 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@TOOL_VERSION@">6.7.1</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">6.7.2</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
diff -r 1b76c07c3156 -r 8b2eaf460ee2 rpcompletion.xml
--- a/rpcompletion.xml	Fri Oct 24 09:46:35 2025 +0000
+++ b/rpcompletion.xml	Mon Nov 17 14:16:04 2025 +0000
@@ -30,7 +30,7 @@
             completed_pathways
             --upper_flux_bound '$adv.upper_flux_bound'
             --lower_flux_bound '$adv.lower_flux_bound'
-            --max_subpaths_filter '$adv.max_subpaths_filter'
+            --maxsubpaths '$adv.maxsubpaths'
             --chemical-space '$adv.chemical_space'
             #if $adv.cofile
                 --cofactors '$adv.cofile'
@@ -61,7 +61,7 @@
             </when>
         </conditional>
         <section name="adv" title="Advanced Options" expanded="false">
-            <param argument="max_subpaths_filter" type="integer" value="10" min="0"
+            <param argument="maxsubpaths" type="integer" value="10" min="0"
                 label="Max subpaths generated per pathway"
                 help="Maximal number of subpaths to be created per master pathway." />
             <param argument="upper_flux_bound" type="integer" value="10000" min="-10000" max="10000"
@@ -71,8 +71,7 @@
                 max="10000" label="Lower flux bound"
                 help="Lower flux bound value to be used in outputted SBML models (fbc SBML package) for new reactions created." />
             <param name="chemical_space" type="select" label="Chemical space">
-                <option value="mnx4.4" selected="True">mnx4.4</option>
-                <option value="mnx3.1">mnx3.1</option>
+                <option value="mnx3.1" selected="True">mnx3.1</option>
             </param>
             <param name="cofile" type="data" format="txt,tsv,tabular" optional="True"
                 label="Cofactor file" />
@@ -94,7 +93,7 @@
                 <param name="cond" value="provided" />
                 <param name="sinkfile" value="2-sink.csv" />
             </conditional>
-            <output_collection name="pathways" type="list" count="10" />
+            <output_collection name="pathways" type="list" count="38" />
         </test>
     </tests>
     <help><![CDATA[