# HG changeset patch # User tduigou # Date 1761230376 0 # Node ID 64ccaeec85543a18e05e2e9589fc15c9cb7183e8 # Parent ec5e25d1a3f195d542f09e8acf208e069c2aaf29 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit df6ff93f58dcad0892d429597544cd674f9253ee-dirty diff -r ec5e25d1a3f1 -r 64ccaeec8554 macros.xml --- a/macros.xml Wed Oct 22 12:03:06 2025 +0000 +++ b/macros.xml Thu Oct 23 14:39:36 2025 +0000 @@ -1,5 +1,5 @@ - 6.6.6 + 6.7.1 0 @@ -12,4 +12,4 @@ - + \ No newline at end of file diff -r ec5e25d1a3f1 -r 64ccaeec8554 rpcompletion.xml --- a/rpcompletion.xml Wed Oct 22 12:03:06 2025 +0000 +++ b/rpcompletion.xml Thu Oct 23 14:39:36 2025 +0000 @@ -13,28 +13,38 @@ description="The sink file is empty or not found" /> empty_sink.csv && #set sinkfile='empty_sink.csv' #else #set sinkfile=$sink.sinkfile #end if + python -m rptools.rpcompletion - '$rp2_pathways' - $sinkfile - '$rp2paths_compounds' - '$rp2paths_pathways' - completed_pathways - --upper_flux_bound '$adv.upper_flux_bound' - --lower_flux_bound '$adv.lower_flux_bound' - --max_subpaths_filter '$adv.max_subpaths_filter' - --chemical-space '$adv.chemical_space' - #if $adv.cofile - --cofactors '$adv.cofile' - #end if - #if not $sink.error_codes - --silent - #end if + '$rp2_pathways' + $sinkfile + '$rp2paths_compounds' + '$rp2paths_pathways' + completed_pathways + --upper_flux_bound '$adv.upper_flux_bound' + --lower_flux_bound '$adv.lower_flux_bound' + --max_subpaths_filter '$adv.max_subpaths_filter' + --chemical-space '$adv.chemical_space' + #if $adv.cofile + --cofactors '$adv.cofile' + #end if + #if not $sink.error_codes + --silent + #end if + --cache-dir '$tmpdir' ]]>