# HG changeset patch
# User tduigou
# Date 1761230376 0
# Node ID 64ccaeec85543a18e05e2e9589fc15c9cb7183e8
# Parent ec5e25d1a3f195d542f09e8acf208e069c2aaf29
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit df6ff93f58dcad0892d429597544cd674f9253ee-dirty
diff -r ec5e25d1a3f1 -r 64ccaeec8554 macros.xml
--- a/macros.xml Wed Oct 22 12:03:06 2025 +0000
+++ b/macros.xml Thu Oct 23 14:39:36 2025 +0000
@@ -1,5 +1,5 @@
- 6.6.6
+ 6.7.1
0
@@ -12,4 +12,4 @@
-
+
\ No newline at end of file
diff -r ec5e25d1a3f1 -r 64ccaeec8554 rpcompletion.xml
--- a/rpcompletion.xml Wed Oct 22 12:03:06 2025 +0000
+++ b/rpcompletion.xml Thu Oct 23 14:39:36 2025 +0000
@@ -13,28 +13,38 @@
description="The sink file is empty or not found" />
empty_sink.csv &&
#set sinkfile='empty_sink.csv'
#else
#set sinkfile=$sink.sinkfile
#end if
+
python -m rptools.rpcompletion
- '$rp2_pathways'
- $sinkfile
- '$rp2paths_compounds'
- '$rp2paths_pathways'
- completed_pathways
- --upper_flux_bound '$adv.upper_flux_bound'
- --lower_flux_bound '$adv.lower_flux_bound'
- --max_subpaths_filter '$adv.max_subpaths_filter'
- --chemical-space '$adv.chemical_space'
- #if $adv.cofile
- --cofactors '$adv.cofile'
- #end if
- #if not $sink.error_codes
- --silent
- #end if
+ '$rp2_pathways'
+ $sinkfile
+ '$rp2paths_compounds'
+ '$rp2paths_pathways'
+ completed_pathways
+ --upper_flux_bound '$adv.upper_flux_bound'
+ --lower_flux_bound '$adv.lower_flux_bound'
+ --max_subpaths_filter '$adv.max_subpaths_filter'
+ --chemical-space '$adv.chemical_space'
+ #if $adv.cofile
+ --cofactors '$adv.cofile'
+ #end if
+ #if not $sink.error_codes
+ --silent
+ #end if
+ --cache-dir '$tmpdir'
]]>