Mercurial > repos > tduigou > rptools_rpextractsink

comparison test-data/rp_002_0001.xml @ 0:b803ac9d24ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 11:12:36 +0000
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-1:000000000000 0:b803ac9d24ab
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="f9b1ff022aa2133fc1e5e5d1fbac90ac29a744e960a2774be646bc71471ed597" id="RP_model_002_0001" name="002_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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121 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
122 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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206 <brsynth:inchikey value="GVVPGTZRZFNKDS-UHFFFAOYSA-N"/>
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249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
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254 </listOfParameters>
255 <listOfReactions>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
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270 <brsynth:rp2_transfo_id value="TRS_0_2_740"/>
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275 <brsynth:tmpl_rxn_ids>
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280 <brsynth:idx_in_path value="1"/>
281 <brsynth:selenzy/>
282 <brsynth:fba_biomass>
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286 <brsynth:fba_fraction>
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288 <brsynth:units value="milimole / gDW / hour"/>
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292 <brsynth:error value="4.6679220722885155"/>
293 <brsynth:units value="kilojoule / mole"/>
294 </brsynth:thermo_dG0_prime>
295 <brsynth:thermo_dGm_prime>
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297 <brsynth:error value="4.6679220722885155"/>
298 <brsynth:units value="kilojoule / mole"/>
299 </brsynth:thermo_dGm_prime>
300 <brsynth:thermo_dG_prime>
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302 <brsynth:error value="4.6679220722885155"/>
303 <brsynth:units value="kilojoule / mole"/>
304 </brsynth:thermo_dG_prime>
305 <brsynth:thermo_dG>
306 <brsynth:value value="-1881.1378556154446"/>
307 <brsynth:error value="4.6679220722885155"/>
308 <brsynth:units value="kilojoule / mole"/>
309 </brsynth:thermo_dG>
310 </brsynth:brsynth>
311 </rdf:BRSynth>
312 </rdf:RDF>
313 </annotation>
314 <listOfReactants>
315 <speciesReference species="MNXM100" stoichiometry="1" constant="true"/>
316 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
317 </listOfReactants>
318 <listOfProducts>
319 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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322 </reaction>
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345 <brsynth:MNXR113543/>
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362 <brsynth:error value="11.000567449695138"/>
363 <brsynth:units value="kilojoule / mole"/>
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368 <brsynth:units value="kilojoule / mole"/>
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373 <brsynth:units value="kilojoule / mole"/>
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379 </brsynth:thermo_dG>
380 </brsynth:brsynth>
381 </rdf:BRSynth>
382 </rdf:RDF>
383 </annotation>
384 <listOfReactants>
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386 </listOfReactants>
387 <listOfProducts>
388 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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450 </listOfReactants>
451 <listOfProducts>
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453 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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455 </reaction>
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585 </groups:group>
586 </groups:listOfGroups>
587 </model>
588 </sbml>