Mercurial > repos > tduigou > rptools_rpextractsink
comparison test-data/rp_002_0021.xml @ 0:b803ac9d24ab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author | tduigou |
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date | Wed, 16 Nov 2022 11:12:36 +0000 |
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-1:000000000000 | 0:b803ac9d24ab |
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1 <?xml version="1.0" encoding="UTF-8"?> | |
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false"> | |
3 <model metaid="a9cc9409d25c0b3d10c2984625f4f08d3d0504a7022a8542a76d156ea34afa32" id="RP_model_002_0021" name="002_0021" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true"> | |
4 <listOfCompartments> | |
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true"> | |
6 <annotation> | |
7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6"> | |
9 <bqbiol:is> | |
10 <rdf:Bag> | |
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/> | |
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/> | |
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/> | |
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/> | |
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/> | |
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/> | |
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/> | |
18 </rdf:Bag> | |
19 </bqbiol:is> | |
20 </rdf:Description> | |
21 </rdf:RDF> | |
22 </annotation> | |
23 </compartment> | |
24 </listOfCompartments> | |
25 <listOfSpecies> | |
26 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
27 <annotation> | |
28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
29 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46"> | |
30 <bqbiol:is> | |
31 <rdf:Bag/> | |
32 </bqbiol:is> | |
33 </rdf:Description> | |
34 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46"> | |
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
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37 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/> | |
38 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/> | |
39 <brsynth:fba_biomass_shadow_price> | |
40 <brsynth:value value="-0.0"/> | |
41 </brsynth:fba_biomass_shadow_price> | |
42 <brsynth:fba_fraction_shadow_price> | |
43 <brsynth:value value="-1.0"/> | |
44 </brsynth:fba_fraction_shadow_price> | |
45 <brsynth:thermo_standard_dg_formation> | |
46 <brsynth:value value="936.7141451846444"/> | |
47 <brsynth:units value="kilojoule / mole"/> | |
48 </brsynth:thermo_standard_dg_formation> | |
49 </brsynth:brsynth> | |
50 </rdf:BRSynth> | |
51 </rdf:RDF> | |
52 </annotation> | |
53 </species> | |
54 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
55 <annotation> | |
56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
57 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0"> | |
58 <bqbiol:is> | |
59 <rdf:Bag/> | |
60 </bqbiol:is> | |
61 </rdf:Description> | |
62 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0"> | |
63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
64 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/> | |
65 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/> | |
66 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/> | |
67 <brsynth:fba_biomass_shadow_price> | |
68 <brsynth:value value="None"/> | |
69 </brsynth:fba_biomass_shadow_price> | |
70 <brsynth:fba_fraction_shadow_price> | |
71 <brsynth:value value="None"/> | |
72 </brsynth:fba_fraction_shadow_price> | |
73 <brsynth:thermo_standard_dg_formation> | |
74 <brsynth:value value="-1828.3274439664424"/> | |
75 <brsynth:units value="kilojoule / mole"/> | |
76 </brsynth:thermo_standard_dg_formation> | |
77 </brsynth:brsynth> | |
78 </rdf:BRSynth> | |
79 </rdf:RDF> | |
80 </annotation> | |
81 </species> | |
82 <species metaid="_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb" id="MNXM35" name="MNXM35" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
83 <annotation> | |
84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
85 <rdf:Description rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb"> | |
86 <bqbiol:is> | |
87 <rdf:Bag/> | |
88 </bqbiol:is> | |
89 </rdf:Description> | |
90 <rdf:BRSynth rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb"> | |
91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
92 <brsynth:smiles/> | |
93 <brsynth:inchi/> | |
94 <brsynth:inchikey/> | |
95 <brsynth:fba_biomass_shadow_price> | |
96 <brsynth:value value="None"/> | |
97 </brsynth:fba_biomass_shadow_price> | |
98 <brsynth:fba_fraction_shadow_price> | |
99 <brsynth:value value="None"/> | |
100 </brsynth:fba_fraction_shadow_price> | |
101 <brsynth:thermo_standard_dg_formation> | |
102 <brsynth:value value="-2172.1728715236113"/> | |
103 <brsynth:units value="kilojoule / mole"/> | |
104 </brsynth:thermo_standard_dg_formation> | |
105 </brsynth:brsynth> | |
106 </rdf:BRSynth> | |
107 </rdf:RDF> | |
108 </annotation> | |
109 </species> | |
110 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
111 <annotation> | |
112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
113 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1"> | |
114 <bqbiol:is> | |
115 <rdf:Bag/> | |
116 </bqbiol:is> | |
117 </rdf:Description> | |
118 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1"> | |
119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
120 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/> | |
121 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/> | |
122 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/> | |
123 <brsynth:fba_biomass_shadow_price> | |
124 <brsynth:value value="None"/> | |
125 </brsynth:fba_biomass_shadow_price> | |
126 <brsynth:fba_fraction_shadow_price> | |
127 <brsynth:value value="None"/> | |
128 </brsynth:fba_fraction_shadow_price> | |
129 <brsynth:thermo_standard_dg_formation> | |
130 <brsynth:value value="-1966.8036657706114"/> | |
131 <brsynth:units value="kilojoule / mole"/> | |
132 </brsynth:thermo_standard_dg_formation> | |
133 </brsynth:brsynth> | |
134 </rdf:BRSynth> | |
135 </rdf:RDF> | |
136 </annotation> | |
137 </species> | |
138 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
139 <annotation> | |
140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
141 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002"> | |
142 <bqbiol:is> | |
143 <rdf:Bag/> | |
144 </bqbiol:is> | |
145 </rdf:Description> | |
146 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002"> | |
147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
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149 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/> | |
150 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/> | |
151 <brsynth:fba_biomass_shadow_price> | |
152 <brsynth:value value="-0.0"/> | |
153 </brsynth:fba_biomass_shadow_price> | |
154 <brsynth:fba_fraction_shadow_price> | |
155 <brsynth:value value="-1.0"/> | |
156 </brsynth:fba_fraction_shadow_price> | |
157 <brsynth:thermo_standard_dg_formation> | |
158 <brsynth:value value="1245.5794452419402"/> | |
159 <brsynth:units value="kilojoule / mole"/> | |
160 </brsynth:thermo_standard_dg_formation> | |
161 </brsynth:brsynth> | |
162 </rdf:BRSynth> | |
163 </rdf:RDF> | |
164 </annotation> | |
165 </species> | |
166 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
167 <annotation> | |
168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
169 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39"> | |
170 <bqbiol:is> | |
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172 </bqbiol:is> | |
173 </rdf:Description> | |
174 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39"> | |
175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
176 <brsynth:smiles/> | |
177 <brsynth:inchi/> | |
178 <brsynth:inchikey/> | |
179 <brsynth:fba_biomass_shadow_price> | |
180 <brsynth:value value="None"/> | |
181 </brsynth:fba_biomass_shadow_price> | |
182 <brsynth:fba_fraction_shadow_price> | |
183 <brsynth:value value="None"/> | |
184 </brsynth:fba_fraction_shadow_price> | |
185 <brsynth:thermo_standard_dg_formation> | |
186 <brsynth:value value="-2256.1898491337233"/> | |
187 <brsynth:units value="kilojoule / mole"/> | |
188 </brsynth:thermo_standard_dg_formation> | |
189 </brsynth:brsynth> | |
190 </rdf:BRSynth> | |
191 </rdf:RDF> | |
192 </annotation> | |
193 </species> | |
194 <species metaid="_3f5eb2f4341086942fd1241ec422493fc345830f18b33b0deb223866e06ace36" id="MNXM100" name="MNXM100" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
195 <annotation> | |
196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
197 <rdf:Description rdf:about="#_3f5eb2f4341086942fd1241ec422493fc345830f18b33b0deb223866e06ace36"> | |
198 <bqbiol:is> | |
199 <rdf:Bag/> | |
200 </bqbiol:is> | |
201 </rdf:Description> | |
202 <rdf:BRSynth rdf:about="#_3f5eb2f4341086942fd1241ec422493fc345830f18b33b0deb223866e06ace36"> | |
203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
204 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/> | |
205 <brsynth:inchi value="InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)"/> | |
206 <brsynth:inchikey value="GVVPGTZRZFNKDS-UHFFFAOYSA-N"/> | |
207 <brsynth:fba_biomass_shadow_price> | |
208 <brsynth:value value="None"/> | |
209 </brsynth:fba_biomass_shadow_price> | |
210 <brsynth:fba_fraction_shadow_price> | |
211 <brsynth:value value="None"/> | |
212 </brsynth:fba_fraction_shadow_price> | |
213 <brsynth:thermo_standard_dg_formation> | |
214 <brsynth:value value="-1719.970141951422"/> | |
215 <brsynth:units value="kilojoule / mole"/> | |
216 </brsynth:thermo_standard_dg_formation> | |
217 </brsynth:brsynth> | |
218 </rdf:BRSynth> | |
219 </rdf:RDF> | |
220 </annotation> | |
221 </species> | |
222 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> | |
223 <annotation> | |
224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
225 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858"> | |
226 <bqbiol:is> | |
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229 </rdf:Description> | |
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231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
232 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/> | |
233 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/> | |
234 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/> | |
235 <brsynth:fba_biomass_shadow_price> | |
236 <brsynth:value value="-0.0018808381539568808"/> | |
237 </brsynth:fba_biomass_shadow_price> | |
238 <brsynth:fba_fraction_shadow_price> | |
239 <brsynth:value value="-0.9946091644204852"/> | |
240 </brsynth:fba_fraction_shadow_price> | |
241 <brsynth:thermo_standard_dg_formation> | |
242 <brsynth:value value="-1495.8281099920857"/> | |
243 <brsynth:units value="kilojoule / mole"/> | |
244 </brsynth:thermo_standard_dg_formation> | |
245 </brsynth:brsynth> | |
246 </rdf:BRSynth> | |
247 </rdf:RDF> | |
248 </annotation> | |
249 </species> | |
250 </listOfSpecies> | |
251 <listOfParameters> | |
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/> | |
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/> | |
254 </listOfParameters> | |
255 <listOfReactions> | |
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> | |
257 <annotation> | |
258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> | |
260 <bqbiol:is> | |
261 <rdf:Bag> | |
262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.82"/> | |
263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/> | |
264 </rdf:Bag> | |
265 </bqbiol:is> | |
266 </rdf:Description> | |
267 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> | |
268 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
269 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]>>[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/> | |
270 <brsynth:rp2_transfo_id value="TRS_0_2_740"/> | |
271 <brsynth:rule_ids> | |
272 <brsynth:RR-02-0c33a3bfd9bf5ad5-14-F/> | |
273 <brsynth:RR-02-6692e4af37fbca2d-14-F/> | |
274 </brsynth:rule_ids> | |
275 <brsynth:tmpl_rxn_ids> | |
276 <brsynth:MNXR132231/> | |
277 <brsynth:MNXR112683/> | |
278 </brsynth:tmpl_rxn_ids> | |
279 <brsynth:rule_score value="0.5706379442030705"/> | |
280 <brsynth:idx_in_path value="1"/> | |
281 <brsynth:selenzy/> | |
282 <brsynth:fba_biomass> | |
283 <brsynth:value value="0.0"/> | |
284 <brsynth:units value="gDW / gDW / hour"/> | |
285 </brsynth:fba_biomass> | |
286 <brsynth:fba_fraction> | |
287 <brsynth:value value="0.6301198587096054"/> | |
288 <brsynth:units value="milimole / gDW / hour"/> | |
289 </brsynth:fba_fraction> | |
290 <brsynth:thermo_dG0_prime> | |
291 <brsynth:value value="-1544.3333670420595"/> | |
292 <brsynth:error value="4.6679220722885155"/> | |
293 <brsynth:units value="kilojoule / mole"/> | |
294 </brsynth:thermo_dG0_prime> | |
295 <brsynth:thermo_dGm_prime> | |
296 <brsynth:value value="-1561.4482045767807"/> | |
297 <brsynth:error value="4.6679220722885155"/> | |
298 <brsynth:units value="kilojoule / mole"/> | |
299 </brsynth:thermo_dGm_prime> | |
300 <brsynth:thermo_dG_prime> | |
301 <brsynth:value value="-1544.3333670420595"/> | |
302 <brsynth:error value="4.6679220722885155"/> | |
303 <brsynth:units value="kilojoule / mole"/> | |
304 </brsynth:thermo_dG_prime> | |
305 <brsynth:thermo_dG> | |
306 <brsynth:value value="-1881.1378556154446"/> | |
307 <brsynth:error value="4.6679220722885155"/> | |
308 <brsynth:units value="kilojoule / mole"/> | |
309 </brsynth:thermo_dG> | |
310 </brsynth:brsynth> | |
311 </rdf:BRSynth> | |
312 </rdf:RDF> | |
313 </annotation> | |
314 <listOfReactants> | |
315 <speciesReference species="MNXM100" stoichiometry="1" constant="true"/> | |
316 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/> | |
317 </listOfReactants> | |
318 <listOfProducts> | |
319 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/> | |
320 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/> | |
321 </listOfProducts> | |
322 </reaction> | |
323 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> | |
324 <annotation> | |
325 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
326 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> | |
327 <bqbiol:is> | |
328 <rdf:Bag> | |
329 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/> | |
330 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/> | |
331 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/> | |
332 </rdf:Bag> | |
333 </bqbiol:is> | |
334 </rdf:Description> | |
335 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> | |
336 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
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338 <brsynth:rp2_transfo_id value="TRS_0_1_9"/> | |
339 <brsynth:rule_ids> | |
340 <brsynth:RR-02-bedda4e2f5001e0c-14-F/> | |
341 </brsynth:rule_ids> | |
342 <brsynth:tmpl_rxn_ids> | |
343 <brsynth:MNXR111250/> | |
344 <brsynth:MNXR111499/> | |
345 <brsynth:MNXR113543/> | |
346 <brsynth:MNXR118024/> | |
347 <brsynth:MNXR139549/> | |
348 </brsynth:tmpl_rxn_ids> | |
349 <brsynth:rule_score value="0.5518755963407151"/> | |
350 <brsynth:idx_in_path value="2"/> | |
351 <brsynth:selenzy/> | |
352 <brsynth:fba_biomass> | |
353 <brsynth:value value="0.0"/> | |
354 <brsynth:units value="gDW / gDW / hour"/> | |
355 </brsynth:fba_biomass> | |
356 <brsynth:fba_fraction> | |
357 <brsynth:value value="0.6301198587096054"/> | |
358 <brsynth:units value="milimole / gDW / hour"/> | |
359 </brsynth:fba_fraction> | |
360 <brsynth:thermo_dG0_prime> | |
361 <brsynth:value value="-119.13360567395966"/> | |
362 <brsynth:error value="11.000567449695138"/> | |
363 <brsynth:units value="kilojoule / mole"/> | |
364 </brsynth:thermo_dG0_prime> | |
365 <brsynth:thermo_dGm_prime> | |
366 <brsynth:value value="-153.36328074340173"/> | |
367 <brsynth:error value="11.000567449695138"/> | |
368 <brsynth:units value="kilojoule / mole"/> | |
369 </brsynth:thermo_dGm_prime> | |
370 <brsynth:thermo_dG_prime> | |
371 <brsynth:value value="-119.13360567395966"/> | |
372 <brsynth:error value="11.000567449695138"/> | |
373 <brsynth:units value="kilojoule / mole"/> | |
374 </brsynth:thermo_dG_prime> | |
375 <brsynth:thermo_dG> | |
376 <brsynth:value value="-1501.0650763644926"/> | |
377 <brsynth:error value="11.000567449695138"/> | |
378 <brsynth:units value="kilojoule / mole"/> | |
379 </brsynth:thermo_dG> | |
380 </brsynth:brsynth> | |
381 </rdf:BRSynth> | |
382 </rdf:RDF> | |
383 </annotation> | |
384 <listOfReactants> | |
385 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/> | |
386 </listOfReactants> | |
387 <listOfProducts> | |
388 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/> | |
389 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/> | |
390 </listOfProducts> | |
391 </reaction> | |
392 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> | |
393 <annotation> | |
394 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
395 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d"> | |
396 <bqbiol:is> | |
397 <rdf:Bag> | |
398 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/> | |
399 </rdf:Bag> | |
400 </bqbiol:is> | |
401 </rdf:Description> | |
402 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d"> | |
403 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
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405 <brsynth:rp2_transfo_id value="TRS_0_0_1"/> | |
406 <brsynth:rule_ids> | |
407 <brsynth:RR-02-ae41ec5771136ea5-14-F/> | |
408 </brsynth:rule_ids> | |
409 <brsynth:tmpl_rxn_ids> | |
410 <brsynth:MNXR125832/> | |
411 </brsynth:tmpl_rxn_ids> | |
412 <brsynth:rule_score value="0.7358363677022237"/> | |
413 <brsynth:idx_in_path value="3"/> | |
414 <brsynth:selenzy/> | |
415 <brsynth:fba_biomass> | |
416 <brsynth:value value="0.0"/> | |
417 <brsynth:units value="gDW / gDW / hour"/> | |
418 </brsynth:fba_biomass> | |
419 <brsynth:fba_fraction> | |
420 <brsynth:value value="0.6301198587096054"/> | |
421 <brsynth:units value="milimole / gDW / hour"/> | |
422 </brsynth:fba_fraction> | |
423 <brsynth:thermo_dG0_prime> | |
424 <brsynth:value value="162.18254376952495"/> | |
425 <brsynth:error value="12.808033567928218"/> | |
426 <brsynth:units value="kilojoule / mole"/> | |
427 </brsynth:thermo_dG0_prime> | |
428 <brsynth:thermo_dGm_prime> | |
429 <brsynth:value value="162.18254376952495"/> | |
430 <brsynth:error value="12.808033567928218"/> | |
431 <brsynth:units value="kilojoule / mole"/> | |
432 </brsynth:thermo_dGm_prime> | |
433 <brsynth:thermo_dG_prime> | |
434 <brsynth:value value="162.18254376952495"/> | |
435 <brsynth:error value="12.808033567928218"/> | |
436 <brsynth:units value="kilojoule / mole"/> | |
437 </brsynth:thermo_dG_prime> | |
438 <brsynth:thermo_dG> | |
439 <brsynth:value value="-27.202610383152432"/> | |
440 <brsynth:error value="12.808033567928218"/> | |
441 <brsynth:units value="kilojoule / mole"/> | |
442 </brsynth:thermo_dG> | |
443 </brsynth:brsynth> | |
444 </rdf:BRSynth> | |
445 </rdf:RDF> | |
446 </annotation> | |
447 <listOfReactants> | |
448 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/> | |
449 <speciesReference species="MNXM35" stoichiometry="4" constant="true"/> | |
450 </listOfReactants> | |
451 <listOfProducts> | |
452 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/> | |
453 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/> | |
454 </listOfProducts> | |
455 </reaction> | |
456 </listOfReactions> | |
457 <groups:listOfGroups> | |
458 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection"> | |
459 <annotation> | |
460 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
461 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299"> | |
462 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> | |
463 <brsynth:fba_biomass> | |
464 <brsynth:value value="0.8769972144269699"/> | |
465 <brsynth:units value="gDW / gDW / hour"/> | |
466 </brsynth:fba_biomass> | |
467 <brsynth:fba_fraction> | |
468 <brsynth:value value="0.6301198587096054"/> | |
469 <brsynth:units value="milimole / gDW / hour"/> | |
470 </brsynth:fba_fraction> | |
471 <brsynth:thermo_dG0_prime> | |
472 <brsynth:value value="-1501.2844289464938"/> | |
473 <brsynth:error value="21.427485792833885"/> | |
474 <brsynth:units value="kilojoule / mole"/> | |
475 </brsynth:thermo_dG0_prime> | |
476 <brsynth:thermo_dGm_prime> | |
477 <brsynth:value value="-1552.628941550657"/> | |
478 <brsynth:error value="21.427485792833885"/> | |
479 <brsynth:units value="kilojoule / mole"/> | |
480 </brsynth:thermo_dGm_prime> | |
481 <brsynth:thermo_dG_prime> | |
482 <brsynth:value value="-1501.2844289464938"/> | |
483 <brsynth:error value="21.427485792833885"/> | |
484 <brsynth:units value="kilojoule / mole"/> | |
485 </brsynth:thermo_dG_prime> | |
486 <brsynth:thermo_dG> | |
487 <brsynth:value value="-3409.405542363089"/> | |
488 <brsynth:error value="21.427485792833885"/> | |
489 <brsynth:units value="kilojoule / mole"/> | |
490 </brsynth:thermo_dG> | |
491 <brsynth:global_score value="0.9851486444473266"/> | |
492 </brsynth:brsynth> | |
493 </rdf:BRSynth> | |
494 </rdf:RDF> | |
495 </annotation> | |
496 <groups:listOfMembers> | |
497 <groups:member groups:idRef="rxn_1"/> | |
498 <groups:member groups:idRef="rxn_2"/> | |
499 <groups:member groups:idRef="rxn_3"/> | |
500 </groups:listOfMembers> | |
501 </groups:group> | |
502 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection"> | |
503 <annotation> | |
504 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
505 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a"> | |
506 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
507 </rdf:BRSynth> | |
508 </rdf:RDF> | |
509 </annotation> | |
510 <groups:listOfMembers> | |
511 <groups:member groups:idRef="CMPD_0000000001"/> | |
512 <groups:member groups:idRef="CMPD_0000000003"/> | |
513 </groups:listOfMembers> | |
514 </groups:group> | |
515 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection"> | |
516 <annotation> | |
517 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
518 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579"> | |
519 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
520 </rdf:BRSynth> | |
521 </rdf:RDF> | |
522 </annotation> | |
523 <groups:listOfMembers> | |
524 <groups:member groups:idRef="CMPD_0000000001"/> | |
525 <groups:member groups:idRef="MNXM83"/> | |
526 <groups:member groups:idRef="TARGET_0000000001"/> | |
527 <groups:member groups:idRef="MNXM100"/> | |
528 <groups:member groups:idRef="CMPD_0000000003"/> | |
529 </groups:listOfMembers> | |
530 </groups:group> | |
531 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection"> | |
532 <annotation> | |
533 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
534 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378"> | |
535 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
536 </rdf:BRSynth> | |
537 </rdf:RDF> | |
538 </annotation> | |
539 <groups:listOfMembers> | |
540 <groups:member groups:idRef="MNXM35"/> | |
541 <groups:member groups:idRef="MNXM11"/> | |
542 <groups:member groups:idRef="MNXM24"/> | |
543 </groups:listOfMembers> | |
544 </groups:group> | |
545 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection"> | |
546 <annotation> | |
547 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
548 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3"> | |
549 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
550 </rdf:BRSynth> | |
551 </rdf:RDF> | |
552 </annotation> | |
553 <groups:listOfMembers> | |
554 <groups:member groups:idRef="MNXM83"/> | |
555 <groups:member groups:idRef="MNXM11"/> | |
556 <groups:member groups:idRef="MNXM100"/> | |
557 </groups:listOfMembers> | |
558 </groups:group> | |
559 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection"> | |
560 <annotation> | |
561 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
562 <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189"> | |
563 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
564 </rdf:BRSynth> | |
565 </rdf:RDF> | |
566 </annotation> | |
567 <groups:listOfMembers> | |
568 <groups:member groups:idRef="MNXM35"/> | |
569 <groups:member groups:idRef="MNXM24"/> | |
570 </groups:listOfMembers> | |
571 </groups:group> | |
572 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection"> | |
573 <annotation> | |
574 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> | |
575 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8"> | |
576 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> | |
577 </rdf:BRSynth> | |
578 </rdf:RDF> | |
579 </annotation> | |
580 <groups:listOfMembers> | |
581 <groups:member groups:idRef="MNXM35"/> | |
582 <groups:member groups:idRef="TARGET_0000000001"/> | |
583 <groups:member groups:idRef="MNXM24"/> | |
584 </groups:listOfMembers> | |
585 </groups:group> | |
586 </groups:listOfGroups> | |
587 </model> | |
588 </sbml> |